Which layover airport has the shortest connection time from Jacksonville to San Diego?

Atlanta (ATL) has the shortest average layover time for this route: 0h 53m.

Which layover airport has the shortest travel time from Jacksonville to San Diego?

Flights connecting via Atlanta (ATL) have the shortest average one-way travel time: 6h 36m.

Which airport is the most popular layover for flights between Jacksonville and San Diego?

Atlanta (ATL) was the most common stop: 80% of momondo users choosing 1-stop flights on this route connected there.

Which layover airport offers the lowest fares from Jacksonville to San Diego?

Flights via Atlanta (ATL) offer the lowest average round-trip price of $463.

What airlines fly to San Diego?

American Airlines, Delta and Southwest are the top three most popular airlines that fly to San Diego from Jacksonville according to our data. American Airlines is the first choice among our users, with 44% of people opting to fly with this airline when traveling to San Diego. Keep in mind that there are 6 different airlines that fly to San Diego on a routine basis, so you have a few additional options to choose from.

What is the cheapest airline that flies from Jacksonville to San Diego?

Frontier and Southwest are the most popular carriers operating from Jacksonville to San Diego

When did momondo last update prices for flights from Jacksonville Airport to San Diego Airport?

Prices for flights from Jacksonville Airport to San Diego Airport were last updated today.

How many operators does momondo search for flights from Jacksonville Airport to San Diego Airport?

As of September 2026, there are 6 operators available to choose from for flights from Jacksonville Airport to San Diego Airport.

How old do you have to be to fly from Jacksonville Airport to San Diego Airport?

The minimum age a child must be to fly alone is five but airlines that offer an unaccompanied minor (UNMR) service will have their own age restrictions, including rules around flight length, timings, and stopovers. We always recommend checking with the individual airline you are booking with to travel from Jacksonville Airport to San Diego Airport.

What documentation or ID do you need to fly to San Diego Airport?

The travel and health documents you'll need for your trip to San Diego Airport may differ based on your itinerary and personal situation. Typically, you should have several documents on hand, such as a national ID card or driver's license and a passport that is valid for six months after your intended arrival at San Diego Airport. It is always advisable to seek advice from your airline or a trusted third party, such as IATA.

$130 Cheap Flights from Jacksonville to San Diego in 2026/27

Discover deals from 900+ travel sites with momondo.

Find the cheapest flights from Jacksonville to San Diego

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One-way

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Cheap round-trip flights

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10:53 am - 7:14 pmJAX Jacksonville-SAN San Diego

11h 21m1 stop Boston Logan Intl

9:40 pm - 9:29 amSAN San Diego-JAX Jacksonville

8h 49m1 stop New York John F Kennedy Intl

$290JetBlue

Sat, Oct 31 - Sat, Nov 7

10:53 am - 7:14 pmJAX Jacksonville-SAN San Diego

11h 21m1 stop Boston Logan Intl

9:44 pm - 11:03 amSAN San Diego-JAX Jacksonville

10h 19m1 stop Boston Logan Intl

$291JetBlue

Wed, Oct 28 - Sat, Oct 31

9:00 am - 2:17 pmJAX Jacksonville-SAN San Diego

8h 17m1 stop Dallas/Fort Worth

10:20 pm - 8:57 amSAN San Diego-JAX Jacksonville

7h 37m1 stop Charlotte Douglas

$299American Airlines

Tue, Oct 27 - Wed, Nov 4

5:08 am - 9:10 amJAX Jacksonville-SAN San Diego

7h 02m1 stop Charlotte Douglas

1:08 pm - 10:51 pmSAN San Diego-JAX Jacksonville

6h 43m1 stop Phoenix Sky Harbor Intl

$299American Airlines

Wed, Oct 14 - Wed, Oct 21

7:10 pm - 11:10 pmJAX Jacksonville-SAN San Diego

7h 00m1 stop Nashville Intl

12:25 pm - 10:05 pmSAN San Diego-JAX Jacksonville

6h 40m1 stop Houston Hobby

$299Southwest

Wed, Oct 21 - Wed, Oct 28

4:55 pm - 9:30 pmJAX Jacksonville-SAN San Diego

7h 35m1 stop Chicago Midway

6:40 am - 5:20 pmSAN San Diego-JAX Jacksonville

7h 40m1 stop Chicago Midway

$299Southwest

Sat, Oct 24 - Sat, Oct 31

11:25 am - 4:25 pmJAX Jacksonville-SAN San Diego

8h 00m1 stop Atlanta Hartsfield-Jackson

6:15 am - 4:43 pmSAN San Diego-JAX Jacksonville

7h 28m1 stop Atlanta Hartsfield-Jackson

$299Delta

Wed, Oct 28 - Sat, Oct 31

4:17 pm - 9:19 pmJAX Jacksonville-SAN San Diego

8h 02m1 stop Atlanta Hartsfield-Jackson

9:50 pm - 8:40 amSAN San Diego-JAX Jacksonville

7h 50m1 stop Atlanta Hartsfield-Jackson

$299Delta

Tue, Dec 1 - Tue, Dec 8

11:35 am - 3:54 pmJAX Jacksonville-SAN San Diego

7h 19m1 stop Houston George Bush Intcntl

9:45 pm - 10:31 amSAN San Diego-JAX Jacksonville

9h 46m1 stop Washington, D.C. Dulles Intl

$299United Airlines

Sat, Nov 14 - Tue, Nov 17

11:35 am - 3:54 pmJAX Jacksonville-SAN San Diego

7h 19m1 stop Houston George Bush Intcntl

10:30 pm - 11:10 amSAN San Diego-JAX Jacksonville

9h 40m1 stop Chicago O'Hare Intl

$299United Airlines

Tue, Nov 10 - Sat, Nov 14

Cheap last minute flights

Enter your travel dates to find the best prices.

1:01 pm - 6:00 pmJAX Jacksonville-SAN San Diego

31h 59m2 stops Raleigh-Durham Dallas/Fort Worth

5:54 pm - 8:02 pmSAN San Diego-JAX Jacksonville

23h 08m1 stop Las Vegas Harry Reid Intl

$552Multiple Airlines

Sun, Sep 20 - Tue, Sep 22

5:34 pm - 9:00 pmJAX Jacksonville-SAN San Diego

6h 26m1 stop Atlanta Hartsfield-Jackson

2:10 pm - 11:56 pmSAN San Diego-JAX Jacksonville

6h 46m1 stop Atlanta Hartsfield-Jackson

$621Delta

Thu, Sep 17 - Tue, Oct 13

1:02 pm - 5:05 pmJAX Jacksonville-SAN San Diego

7h 03m1 stop Atlanta Hartsfield-Jackson

2:10 pm - 11:56 pmSAN San Diego-JAX Jacksonville

6h 46m1 stop Atlanta Hartsfield-Jackson

$621Delta

Fri, Sep 18 - Tue, Oct 13

9:26 pm - 12:37 pmJAX Jacksonville-SAN San Diego

18h 11m2 stops Hartford Bradley Intl Raleigh-Durham

5:54 pm - 8:02 pmSAN San Diego-JAX Jacksonville

23h 08m1 stop Las Vegas Harry Reid Intl

$635Multiple Airlines

Mon, Sep 21 - Tue, Oct 6

6:00 am - 1:00 pmJAX Jacksonville-SAN San Diego

10h 00m1 stop Charlotte Douglas

6:15 am - 4:15 pmSAN San Diego-JAX Jacksonville

7h 00m1 stop Dallas/Fort Worth

$651American Airlines

Sat, Sep 19 - Sat, Sep 26

1:40 pm - 6:51 pmJAX Jacksonville-SAN San Diego

8h 11m1 stop Dallas/Fort Worth

7:15 am - 6:54 pmSAN San Diego-JAX Jacksonville

8h 39m1 stop Dallas/Fort Worth

$651American Airlines

Sat, Sep 19 - Wed, Sep 23

5:10 pm - 9:05 pmJAX Jacksonville-SAN San Diego

6h 55m1 stop Denver Intl

8:35 am - 8:30 pmSAN San Diego-JAX Jacksonville

8h 55m2 stops Phoenix Sky Harbor Intl Denver Intl

$656Southwest

Sat, Sep 19 - Wed, Sep 23

5:10 pm - 10:55 pmJAX Jacksonville-SAN San Diego

8h 45m2 stops Denver Intl Las Vegas Harry Reid Intl

7:00 am - 9:20 pmSAN San Diego-JAX Jacksonville

11h 20m2 stops Seattle/Tacoma Intl Chicago Midway

$661Southwest

Sat, Sep 19 - Wed, Sep 23

9:26 pm - 12:37 pmJAX Jacksonville-SAN San Diego

18h 11m2 stops Hartford Bradley Intl Raleigh-Durham

1:13 pm - 5:45 pmSAN San Diego-JAX Jacksonville

25h 32m1 stop Norfolk

$703Breeze Airways

Mon, Sep 21 - Sat, Oct 3

9:05 am - 12:37 pmJAX Jacksonville-SAN San Diego

30h 32m2 stops Tweed-New Haven Raleigh-Durham

1:22 pm - 3:44 pmSAN San Diego-JAX Jacksonville

23h 22m3 stops Raleigh-Durham Providence-TFGreen Norfolk

$1,203Breeze Airways

Mon, Sep 21 - Tue, Oct 6

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Southwest flights from Jacksonville to San Diego

Our best Southwest deals on Jacksonville to San Diego flight tickets

Southwest

Oct 24

JAX6:35 amJacksonville

8h 20m

2 stops

SAN11:55 amSan Diego

Oct 31

SAN6:40 amSan Diego

7h 40m

1 stop

JAX5:20 pmJacksonville

$305

Southwest

Oct 27

JAX10:00 amJacksonville

8h 55m

2 stops

SAN3:55 pmSan Diego

Nov 4

SAN10:55 amSan Diego

8h 25m

2 stops

JAX10:20 pmJacksonville

$310

Southwest

Dec 3

JAX7:05 pmJacksonville

7h 05m

1 stop

SAN11:10 pmSan Diego

Jan 5

SAN8:20 amSan Diego

10h 55m

2 stops

JAX10:15 pmJacksonville

$324

JetBlue flights from Jacksonville to San Diego

Our best JetBlue deals on Jacksonville to San Diego flight tickets

JetBlue

Oct 31

JAX10:53 amJacksonville

11h 21m

1 stop

SAN7:14 pmSan Diego

Nov 7

SAN9:40 pmSan Diego

8h 49m

1 stop

JAX9:29 amJacksonville

$290

JetBlue

Oct 28

JAX10:53 amJacksonville

11h 21m

1 stop

SAN7:14 pmSan Diego

Oct 31

SAN9:44 pmSan Diego

10h 19m

1 stop

JAX11:03 amJacksonville

$291

JetBlue

Nov 13

JAX10:53 amJacksonville

11h 05m

1 stop

SAN6:58 pmSan Diego

Nov 16

SAN8:26 pmSan Diego

10h 35m

1 stop

JAX10:01 amJacksonville

$350

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Sat 10/31

10:53 am-7:14 pm

1 stop11h 21m

San Diego

Sat 11/7

9:40 pm-9:29 am

1 stop8h 49m

$290

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Wed 10/28

10:53 am-7:14 pm

1 stop11h 21m

San Diego

Sat 10/31

9:44 pm-11:03 am

1 stop10h 19m

$291

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Tue 10/27

9:00 am-2:17 pm

1 stop8h 17m

San Diego

Wed 11/4

10:20 pm-8:57 am

1 stop7h 37m

$299

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Wed 10/14

5:08 am-9:10 am

1 stop7h 02m

San Diego

Wed 10/21

1:08 pm-10:51 pm

1 stop6h 43m

$299

Quickest round-trip

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Wed 10/21

7:10 pm-11:10 pm

1 stop7h 00m

San Diego

Wed 10/28

12:25 pm-10:05 pm

1 stop6h 40m

$299

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Sat 10/24

4:55 pm-9:30 pm

1 stop7h 35m

San Diego

Sat 10/31

6:40 am-5:20 pm

1 stop7h 40m

$299

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Wed 10/28

11:25 am-4:25 pm

1 stop8h 00m

San Diego

Sat 10/31

6:15 am-4:43 pm

1 stop7h 28m

$299

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Tue 12/1

4:17 pm-9:19 pm

1 stop8h 02m

San Diego

Tue 12/8

9:50 pm-8:40 am

1 stop7h 50m

$299

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Sat 11/14

11:35 am-3:54 pm

1 stop7h 19m

San Diego

Tue 11/17

9:45 pm-10:31 am

1 stop9h 46m

$299

JacksonvilleSan Diego

JAX Jacksonville - SAN San Diego

JAXSAN

Jacksonville

Tue 11/10

11:35 am-3:54 pm

1 stop7h 19m

San Diego

Sat 11/14

10:30 pm-11:10 am

1 stop9h 40m

$299

Flights are sorted by cheapest round-trip flights first.

Showing 1-10 of 20 resultsSorted by cheapest first

How to get the cheapest flight ticket from Jacksonville to San Diego

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

Prices

Airlines

Layovers

What is the typical price of a round-trip flight between Jacksonville and San Diego?

Prices are currently low for flights on this route.

Typical prices usually range from $338 to $547.
The lowest price recently found on this route was $290.

What is the cheapest month to fly to San Diego?

If you are unable to visit San Diego during the month of May, then departing from Jacksonville during the month August is also very affordable. Most momondo users find prices during this month for around $319.

What is the cheapest day to depart on your flight to San Diego?

The cheapest day to depart from Jacksonville to San Diego is on a Saturday. Travelers who choose to depart for San Diego on a Saturday will often find tickets for as low as $298. If your travel schedule is flexible, try to avoid departing on a Tuesday because tickets tend to average around $437. These prices are subject to change though, so be sure to set up a Price Alert for flights to San Diego.

What is the cheapest Jacksonville to San Diego flight route?

Fly from Jacksonville to San Diego for the best Jacksonville - San Diego flight prices

How far in advance should I book a flight from Jacksonville to San Diego?

You are more likely to see cheaper flights to San Diego from Jacksonville when booking weeks ahead of your departure date. In general, you can expect to find flights to San Diego for around $468 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to San Diego from Jacksonville for as low as $291 on momondo.

What cabin class options are available on Jacksonville to San Diego flights?

There are 2 cabin classes available to choose from on Jacksonville to San Diego flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Can stopping save me money on Jacksonville to San Diego flights?

No. A direct flight is the cheapest option for a flight between Jacksonville to San Diego.

How have Jacksonville to San Diego flight prices changed over time?

As of September 2026, prices for Jacksonville to San Diego flights are approximately 9% more expensive when compared to flights at the same time last year.

When to book flights from Jacksonville to San Diego

Are you open to changing your travel dates? Check out the ideal times to fly from Jacksonville to San Diego according to our flight data. Find out which month and days have the cheapest flights.

Estimated round-trip price

Cheap Jacksonville to San Diego (JAX to SAN) flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Jacksonville to San Diego

Best Price Found	$130
Fastest flight time	6h 45m
Direct flights	None

The best one-way flight to San Diego from Jacksonville in the past 72 hours is $130. The best round-trip flight deal from Jacksonville to San Diego found on momondo in the last 72 hours is $290.

The fastest flight from Jacksonville to San Diego takes 6h 45m

There are no direct flights from Jacksonville to San Diego. There are no popular flight routes from Jacksonville to San Diego.

Search flight deals

Frequently asked questions about flying from Jacksonville to San Diego

How far is Jacksonville to San Diego by plane?
A flight from Jacksonville to San Diego will travel around 2086.3 mi. A reasonable flight in good conditions will take 6h 45m.
When did momondo last update prices for flights from Jacksonville Airport to San Diego Airport?
Prices for flights from Jacksonville Airport to San Diego Airport were last updated today.
How many operators does momondo search for flights from Jacksonville Airport to San Diego Airport?
As of September 2026, there are 6 operators available to choose from for flights from Jacksonville Airport to San Diego Airport.
How old do you have to be to fly from Jacksonville Airport to San Diego Airport?
The minimum age a child must be to fly alone is five but airlines that offer an unaccompanied minor (UNMR) service will have their own age restrictions, including rules around flight length, timings, and stopovers. We always recommend checking with the individual airline you are booking with to travel from Jacksonville Airport to San Diego Airport.
What documentation or ID do you need to fly to San Diego Airport?
The travel and health documents you'll need for your trip to San Diego Airport may differ based on your itinerary and personal situation. Typically, you should have several documents on hand, such as a national ID card or driver's license and a passport that is valid for six months after your intended arrival at San Diego Airport. It is always advisable to seek advice from your airline or a trusted third party, such as IATA.
What is the most popular plane model from Jacksonville to San Diego?
Based on momondo bookings for flights between Jacksonville and San Diego, the leading plane model is Airbus A220-300, making up 100.00% of the total bookings.
What is the most popular airline from Jacksonville to San Diego?
momondo data reveals that the most frequently booked airline on the route from Jacksonville to San Diego is American Airlines, representing 25% of all bookings. The subsequent popular airlines are Southwest at 23%, Breeze Airways at 21%, and Delta at 18%.

Best airlines flying from Jacksonville to San Diego

Compare and see reviews for airlines that fly from Jacksonville to San Diego with momondo

Airline	Rating	Free Cancellation	Price
Breeze Airways	PriceFrom $116	Free Cancellation	Rating 8.2 322 reviews	Search Breeze Airways flights
JetBlue	PriceFrom $145	Free Cancellation	Rating 7.1 3,035 reviews	Search JetBlue flights
Delta	PriceFrom $246	Free Cancellation	Rating 7.8 8,576 reviews	Search Delta flights
American Airlines	PriceFrom $314	Free Cancellation	Rating 7.1 12,070 reviews	Search American Airlines flights
Southwest	PriceFrom $336	Free Cancellation	Rating 8.0 4,187 reviews	Search Southwest flights
United Airlines	PriceFrom $380	Free Cancellation	Rating 7.4 10,214 reviews	Search United Airlines flights

Chula Vista

El Cajon

Coronado

National City

La Mesa

Julian

Poway

San Ysidro

Imperial Beach

Santee

Alpine

Lemon Grove

Borrego Springs

Why use momondo?

Why should I use momondo to find a flight deal from Jacksonville to San Diego?

momondo collates all your flight options in one place and lets you filter them to find the perfect flight from Jacksonville to San Diego. momondo saves you time and could save you money on your trip.

Can I find flights from Jacksonville to San Diego with flexible booking policies on momondo?

Yes. momondo enables you to select and highlight flights to San Diego from Jacksonville with this policy.

How can momondo help me find flights from Jacksonville to San Diego?

Once you have performed a search in the form on the page, momondo provides useful filters and insights. We can show you the cheapest days and times to fly as well as help filter your options to help you make an informed choice when booking flights to San Diego from Jacksonville.

I’m not ready to book a flight from Jacksonville to San Diego right now. Can momondo alert me if prices change?

If you are simply researching potential flights to San Diego, momondo offers a useful price alert feature which will track prices for flights to San Diego from Jacksonville and alert you when they change.

An easier way to manage your San Diego trip

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Cheap flights from Jacksonville to San Diego from $130

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from Jacksonville to San Diego departing on 10/26. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.

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Southwest flights from Jacksonville to San Diego

Our best Southwest deals on Jacksonville to San Diego flight tickets

JetBlue flights from Jacksonville to San Diego

Our best JetBlue deals on Jacksonville to San Diego flight tickets

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Use the filters below to find and compare flights from Jacksonville to San Diego that are best for you.

See travel insights to San Diego from

How to get the cheapest flight ticket from Jacksonville to San Diego

What is the typical price of a round-trip flight between Jacksonville and San Diego?

What is the cheapest month to fly to San Diego?

What is the cheapest day to depart on your flight to San Diego?

What is the cheapest Jacksonville to San Diego flight route?

How far in advance should I book a flight from Jacksonville to San Diego?

What cabin class options are available on Jacksonville to San Diego flights?

Can stopping save me money on Jacksonville to San Diego flights?

How have Jacksonville to San Diego flight prices changed over time?

What is the cheapest airline that flies from Jacksonville to San Diego?

What airlines fly to San Diego?

Which airport is the most popular layover for flights between Jacksonville and San Diego?

Which layover airport offers the lowest fares from Jacksonville to San Diego?

Which layover airport has the shortest travel time from Jacksonville to San Diego?

Which layover airport has the shortest connection time from Jacksonville to San Diego?

When to book flights from Jacksonville to San Diego

Cheap Jacksonville to San Diego (JAX to SAN) flight deals and tips

Best Price Found

Fastest flight time

Direct flights

Frequently asked questions about flying from Jacksonville to San Diego

Best airlines flying from Jacksonville to San Diego

Compare and see reviews for airlines that fly from Jacksonville to San Diego with momondo

Traveling to a place near San Diego?

Why use momondo?

An easier way to manage your San Diego trip

We make it super easy to schedule, organize and travel with friends or family. Trips is free — and available to use no matter where you book.

Get notified when prices go down

Daily price changes in your inbox - only with Price Alerts.

Find better results for your trip to the United States

Airports servicing California

Fly your favorite airline to San Diego

Airlines are sorted and displayed according to clicks in the past 7 days on momondo

Cabin classes currently available on flights to San Diego

List of cabin classes available on flights landing in San Diego. Availability may vary depending on flight origin and airline.

Popular cities in the United States

Popular flights according to clicks in the last 7 days on momondo

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