Cheap flights from Honolulu to San Diego from $168

If you are unable to visit San Diego during the month of January, then departing from Honolulu during the month February is also very affordable. Most momondo users find prices during this month for around $435.

The cheapest day to depart from Honolulu to San Diego is on a Wednesday. Travelers who choose to depart for San Diego on a Wednesday will often find tickets for as low as $500. If your travel schedule is flexible, try to avoid departing on a Saturday because tickets tend to average around $637. These prices are subject to change though, so be sure to set up a Price Alert for flights to San Diego.

The cheapest time of day to fly to San Diego is in the morning when flights can be purchased for as low as $530. Flights in the evening are often more expensive with an average ticket price of $587.

Fly from Honolulu to San Diego for the best Honolulu - San Diego flight prices

You are more likely to see cheaper flights to San Diego from Honolulu when booking weeks ahead of your departure date. In general, you can expect to find flights to San Diego for around $490 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to San Diego from Honolulu for as low as $362 on momondo.

There are 4 cabin classes available to choose from on Honolulu to San Diego flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Southwest is the most popular carrier operating from Honolulu to San Diego

Alaska Airlines, Hawaiian Airlines and Southwest are the top three most popular airlines that fly to San Diego from Honolulu according to our data. Alaska Airlines is the first choice among our users, with 45% of people opting to fly with this airline when traveling to San Diego. Keep in mind that there are 7 different airlines that fly to San Diego on a routine basis, so you have a few additional options to choose from.

As of March 2026, 12 flights take off from Honolulu and land in San Diego each day. The most common flight departure time for this route is 12:00PM, with 40% of daily flights taking off in the evening.

As of March 2026, 86 flights take off from Honolulu and land in San Diego each week. The most common flight departure day for this route is Sat, with 16% of weekly flights taking off on this day.