Cheap flights from Baja California Sur to San Diego from $206

If you are unable to visit San Diego during the month of November, then departing from Baja California Sur during the month March is also very affordable. Most momondo users find prices during this month for around $181.

The cheapest day to depart from Baja California Sur to San Diego is on a Saturday. Travelers who choose to depart for San Diego on a Saturday will often find tickets for as low as $364. If your travel schedule is flexible, try to avoid departing on a Sunday because tickets tend to average around $608. These prices are subject to change though, so be sure to set up a Price Alert for flights to San Diego.

The cheapest time of day to fly to San Diego is in the afternoon when flights can be purchased for as low as $304. Flights in the morning are often more expensive with an average ticket price of $569.

Fly from San José del Cabo Los Cabos to San Diego for the best Baja California Sur - San Diego flight prices

There are 4 cabin classes available to choose from on Baja California Sur to San Diego flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

You could potentially save up to 6% on your flight if you consider stops on a Baja California Sur to San Diego flight.

Alaska Airlines, Delta, and United Airlines are the most popular carriers operating from Baja California Sur to San Diego

Alaska Airlines, Volaris and Southwest are the top three most popular airlines that fly to San Diego from Baja California Sur according to our data. Alaska Airlines is the first choice among our users, with 40% of people opting to fly with this airline when traveling to San Diego. Keep in mind that there are 3 different airlines that fly to San Diego on a routine basis, so you have a few additional options to choose from.

As of June 2026, 3 flights take off from Baja California Sur and land in San Diego each day. The most common flight departure time for this route is 2:00PM, with 64% of daily flights taking off in the afternoon.

As of June 2026, there are 22 flights per week flying from Baja California Sur to San Diego. The most common day of the week flights depart is Mon, with 18% of flights taking off on this day.