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Cheap flights from San Diego to Puerto Rico from $133

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from San Diego to Puerto Rico departing on 4/28. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Find the cheapest flights from San Diego to Puerto Rico

Cheap round-trip flights

Enter your travel dates to find the best prices.
Multiple Airlines Logo
7:00 am - 11:10 pm
SAN
-
SJU
13h 10m
1 stop
Multiple Airlines Logo
6:30 am - 8:42 am
SJU
-
SAN
29h 12m
2 stops
$328Multiple Airlines
Fri, May 1 - Fri, May 8
Multiple Airlines Logo
6:25 am - 11:43 pm
SAN
-
SJU
14h 18m
2 stops
Multiple Airlines Logo
2:37 pm - 3:26 pm
SJU
-
SAN
27h 49m
1 stop
$329Multiple Airlines
Mon, May 4 - Fri, May 8
Multiple Airlines Logo
7:20 am - 1:32 pm
SAN
-
SJU
27h 12m
1 stop
Multiple Airlines Logo
6:30 am - 8:42 am
SJU
-
SAN
29h 12m
2 stops
$333Multiple Airlines
Sun, May 3 - Fri, May 8
Multiple Airlines Logo
11:42 am - 10:39 am
SAN
-
SJU
19h 57m
2 stops
Multiple Airlines Logo
2:37 pm - 6:25 pm
SJU
-
SAN
30h 48m
1 stop
$334Multiple Airlines
Sat, May 2 - Fri, May 8
Multiple Airlines Logo
6:45 am - 11:49 am
SAN
-
SJU
26h 04m
2 stops
Multiple Airlines Logo
7:00 am - 5:52 pm
SJU
-
SAN
37h 52m
3 stops
$335Multiple Airlines
Mon, Apr 13 - Thu, Apr 16
United Airlines Logo
7:20 am - 11:09 pm
SAN
-
BQN
12h 49m
1 stop
United Airlines Logo
12:15 am - 3:33 pm
BQN
-
SAN
18h 18m
2 stops
$486United Airlines
Sat, May 2 - Tue, May 5
United Airlines Logo
6:20 am - 11:09 pm
SAN
-
BQN
13h 49m
2 stops
United Airlines Logo
12:15 am - 9:21 am
BQN
-
SAN
12h 06m
1 stop
$524United Airlines
Tue, Jul 7 - Mon, Jul 13
United Airlines Logo
6:32 am - 11:09 pm
SAN
-
BQN
13h 37m
2 stops
United Airlines Logo
12:15 am - 9:40 am
BQN
-
SAN
12h 25m
1 stop
$556United Airlines
Fri, Apr 24 - Mon, Apr 27
United Airlines Logo
6:32 am - 11:09 pm
SAN
-
BQN
13h 37m
2 stops
United Airlines Logo
12:15 am - 11:04 am
BQN
-
SAN
13h 49m
2 stops
$560United Airlines
Fri, Apr 24 - Mon, Apr 27
JetBlue Logo
9:15 pm - 1:36 am
SAN
-
BQN
25h 21m
1 stop
JetBlue Logo
5:01 am - 8:05 pm
BQN
-
SAN
18h 04m
1 stop
$626JetBlue
Fri, Apr 24 - Tue, Apr 28

JetBlue flights from San Diego to Puerto Rico

Our best JetBlue deals on San Diego to Puerto Rico flight tickets
JetBlue
May 11
SAN9:10 pmSan Diego
10h 14m
1 stop
SJU10:24 amSan Juan Luis Munoz Marin Intl
May 18
SJU10:55 pmSan Juan Luis Munoz Marin Intl
13h 20m
1 stop
SAN9:15 amSan Diego
$400
JetBlue
Apr 28
SAN9:15 pmSan Diego
13h 14m
1 stop
SJU1:29 pmSan Juan Luis Munoz Marin Intl
May 10
SJU10:55 pmSan Juan Luis Munoz Marin Intl
13h 20m
1 stop
SAN9:15 amSan Diego
$403
JetBlue
May 2
SAN9:15 pmSan Diego
10h 04m
1 stop
SJU10:19 amSan Juan Luis Munoz Marin Intl
May 6
SJU8:00 amSan Juan Luis Munoz Marin Intl
14h 18m
1 stop
SAN7:18 pmSan Diego
$405

American Airlines flights from San Diego to Puerto Rico

Our best American Airlines deals on San Diego to Puerto Rico flight tickets
American Airlines
May 1
SAN10:30 pmSan Diego
12h 20m
1 stop
SJU1:50 pmSan Juan Luis Munoz Marin Intl
May 9
SJU11:59 pmSan Juan Luis Munoz Marin Intl
11h 16m
1 stop
SAN8:15 amSan Diego
$380
American Airlines
May 16
SAN3:12 pmSan Diego
10h 20m
1 stop
SJU4:32 amSan Juan Luis Munoz Marin Intl
May 22
SJU12:44 amSan Juan Luis Munoz Marin Intl
10h 38m
1 stop
SAN8:22 amSan Diego
$388
American Airlines
Apr 22
SAN6:40 amSan Diego
11h 11m
1 stop
SJU8:51 pmSan Juan Luis Munoz Marin Intl
Apr 29
SJU2:42 pmSan Juan Luis Munoz Marin Intl
11h 07m
1 stop
SAN10:49 pmSan Diego
$391

momondo Fare Finder

 
Customize your flight search to find flights from San Diego to Puerto Rico that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, momondo users made 832,500 searches. Data last updated April 2, 2026.
Use the filters below to find and compare flights from San Diego to Puerto Rico that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Fri 5/1

7:00 am-11:10 pm

1 stop13h 10m

San Juan Luis Munoz Marin Intl

Fri 5/8

6:30 am-8:42 am

2 stops29h 12m

$328

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Mon 5/4

6:25 am-11:43 pm

2 stops14h 18m

San Juan Luis Munoz Marin Intl

Fri 5/8

2:37 pm-3:26 pm

1 stop27h 49m

$329

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Sun 5/3

7:20 am-1:32 pm

1 stop27h 12m

San Juan Luis Munoz Marin Intl

Fri 5/8

6:30 am-8:42 am

2 stops29h 12m

$333

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Sat 5/2

11:42 am-10:39 am

2 stops19h 57m

San Juan Luis Munoz Marin Intl

Fri 5/8

2:37 pm-6:25 pm

1 stop30h 48m

$334

San DiegoSan Juan

SAN - SJU

SANSJU

San Diego

Mon 4/13

6:45 am-11:49 am

2 stops26h 04m

San Juan Luis Munoz Marin Intl

Thu 4/16

7:00 am-5:52 pm

3 stops37h 52m

$335

San DiegoAguadilla

SAN - BQN

SANBQN

San Diego

Sat 5/2

7:20 am-11:09 pm

1 stop12h 49m

Aguadilla Borinquen

Tue 5/5

12:15 am-3:33 pm

2 stops18h 18m

$486
Quickest round-trip

San DiegoAguadilla

SAN - BQN

SANBQN

San Diego

Tue 7/7

6:20 am-11:09 pm

2 stops13h 49m

Aguadilla Borinquen

Mon 7/13

12:15 am-9:21 am

1 stop12h 06m

$524

San DiegoAguadilla

SAN - BQN

SANBQN

San Diego

Fri 4/24

6:32 am-11:09 pm

2 stops13h 37m

Aguadilla Borinquen

Mon 4/27

12:15 am-9:40 am

1 stop12h 25m

$556

San DiegoAguadilla

SAN - BQN

SANBQN

San Diego

Fri 4/24

6:32 am-11:09 pm

2 stops13h 37m

Aguadilla Borinquen

Mon 4/27

12:15 am-11:04 am

2 stops13h 49m

$560

San DiegoAguadilla

SAN - BQN

SANBQN

San Diego

Fri 4/24

9:15 pm-1:36 am

1 stop25h 21m

Aguadilla Borinquen

Tue 4/28

5:01 am-8:05 pm

1 stop18h 04m

$626

Flights are sorted by cheapest round-trip flights first.

Showing 1-10 of 20 resultsSorted by cheapest first
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See travel insights to Puerto Rico from

How to get the cheapest flight ticket from San Diego to Puerto Rico

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the cheapest month to fly to Puerto Rico?

If you don’t want to visit Puerto Rico in October, then you should wait until September to fly from San Diego, when ticket prices are also cheap, with an average price of $431.

How far in advance should I book a flight to Puerto Rico?

You are more likely to see cheaper flights to Puerto Rico from San Diego when booking weeks ahead of your departure date. In general, you can expect to find flights to Puerto Rico for around $516 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Puerto Rico from San Diego for as low as $434 on momondo.

Can stopping save me money on San Diego to Puerto Rico flights?

You could potentially save up to 15% on your flight if you consider stops on a San Diego to Puerto Rico flight.

Cheap San Diego to Puerto Rico flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from San Diego to Puerto Rico

Fastest flight time

9h 14m

Direct flights

None
The fastest flight from San Diego to Puerto Rico takes 9h 14m
There are no direct flights from San Diego to Puerto Rico. There are no popular flight routes from San Diego to Puerto Rico.
Search flight deals

Frequently asked questions about flying from San Diego to Puerto Rico

  • When did momondo last update prices for flights from San Diego Airport to Puerto Rico?

    Prices for flights from San Diego Airport to Puerto Rico refresh daily.

  • How many operators does momondo search for flights from San Diego Airport to Puerto Rico?

  • How old do you have to be to fly from San Diego Airport to Puerto Rico?

    Although the minimum age for a child to fly alone is five, airlines that offer an unaccompanied minor (UMNR) service may have their own age limits, which could be impacted by factors such as flight length, timing, and layovers. It is recommended that you verify with the airline you are booking with for travel from San Diego Airport to Puerto Rico.

  • What documentation or ID do you need to fly to Puerto Rico?

    The travel and health documents required for your trip to Puerto Rico can vary based on your itinerary and personal situation. As a rule, consider having multiple documents such as a national ID card or driver’s license, and a passport valid for six-months after you plan to arrive at Puerto Rico. We always recommend checking with your airline or a trusted third party such as IATA to get advice.

  • What is the most popular plane model from San Diego to Puerto Rico?

Best airlines flying from San Diego to Puerto Rico

Compare and see reviews for airlines that fly from San Diego to Puerto Rico with momondo
Airline
Rating
Free Cancellation
Price
DeltaPriceFrom $176Free CancellationRating
7.9
8,371 reviews
Search Delta flights
United AirlinesPriceFrom $182Free CancellationRating
7.4
9,532 reviews
Search United Airlines flights
JetBluePriceFrom $214Free CancellationRating
7.2
2,911 reviews
Search JetBlue flights
FrontierPriceFrom $215Free CancellationRating
5.7
3,004 reviews
Search Frontier flights
Spirit AirlinesPriceFrom $260Free CancellationRating
6.3
8,576 reviews
Search Spirit Airlines flights
American AirlinesPriceFrom $312Free CancellationRating
7.1
11,549 reviews
Search American Airlines flights
SouthwestPriceFrom $382Free CancellationRating
8.0
4,337 reviews
Search Southwest flights
Alaska AirlinesPriceFrom $475Free CancellationRating
7.9
12,153 reviews
Search Alaska Airlines flights

Why use momondo?

Why should I use momondo to find a flight deal from San Diego to Puerto Rico?

Finding the right flight to Puerto Rico from San Diego is quick and easy when you have a range of options in front of you, from reputable agents and recognisable airlines. Options that can then be filtered down to find the best fit. That is what momondo does. We make finding flights to Puerto Rico quick and easy, saving you time and money.

Can I find flights from San Diego to Puerto Rico with flexible booking policies on momondo?

Yes. momondo allows you to filter the results for San Diego to Puerto Rico flights to just show those with flexible booking policies.

How can momondo help me find flights from San Diego to Puerto Rico?

Once you have performed a search in the form on the page, momondo provides useful filters and insights. We can show you the cheapest days and times to fly as well as help filter your options to help you make an informed choice when booking flights to Puerto Rico from San Diego.

I’m not ready to book a flight from San Diego to Puerto Rico right now. Can momondo alert me if prices change?

Price alerts on flights to Puerto Rico from San Diego are quick and easy to set up on momondo. Simply perform a search and select the price alert feature. It is as simple as that.

An easier way to manage your Puerto Rico trip

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