Cheap flights from Missoula to Juneau from $489

This is the cheapest round-trip flight price found by a momondo user in the last 72 hours by searching for a flight from Missoula to Juneau departing on 2/6. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
1 adult
0 bags

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Cheap round-trip flights

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Alaska Airlines Logo
6:23 am - 8:03 pm
MSO
-
JNU
39h 40m3 stops
Alaska Airlines Logo
9:47 am - 3:31 pm
JNU
-
MSO
27h 44m3 stops
$489Alaska Airlines
Fri, Feb 6 - Mon, Feb 9
Alaska Airlines Logo
6:23 am - 1:24 pm
MSO
-
JNU
9h 01m1 stop
Alaska Airlines Logo
7:20 am - 11:55 pm
JNU
-
MSO
14h 35m2 stops
$494Alaska Airlines
Fri, Feb 6 - Mon, Feb 9
Alaska Airlines Logo
6:23 am - 1:24 pm
MSO
-
JNU
9h 01m1 stop
Alaska Airlines Logo
2:20 pm - 11:55 pm
JNU
-
MSO
7h 35m1 stop
$499Alaska Airlines
Fri, Feb 6 - Mon, Feb 9

Alaska Airlines flights from Missoula to Juneau

Our best Alaska Airlines deals on Missoula to Juneau flight tickets
Alaska Airlines
Feb 6
MSO6:23 amMissoula Johnson-Bell Field
17h 11m
2 stops
JNU9:34 pmJuneau Intl
Feb 9
JNU7:20 amJuneau Intl
14h 35m
2 stops
MSO11:55 pmMissoula Johnson-Bell Field
Alaska Airlines
Feb 6
MSO6:23 amMissoula Johnson-Bell Field
9h 01m
1 stop
JNU1:24 pmJuneau Intl
Feb 9
JNU7:20 amJuneau Intl
14h 35m
2 stops
MSO11:55 pmMissoula Johnson-Bell Field
Alaska Airlines
Feb 6
MSO6:23 amMissoula Johnson-Bell Field
9h 01m
1 stop
JNU1:24 pmJuneau Intl
Feb 9
JNU7:00 amJuneau Intl
6h 31m
1 stop
MSO3:31 pmMissoula Johnson-Bell Field

momondo Fare Finder

 
Customize your flight search to find flights from Missoula to Juneau that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, momondo users made 832,500 searches. Data last updated December 11, 2025.
Use the filters below to find and compare flights from Missoula to Juneau that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

MissoulaJuneau

MSO - JNU

MSOJNU

Missoula Johnson-Bell Field

Fri 2/6

6:23 am-8:03 pm

3 stops39h 40m

Juneau Intl

Mon 2/9

9:47 am-3:31 pm

3 stops27h 44m

$489

MissoulaJuneau

MSO - JNU

MSOJNU

Missoula Johnson-Bell Field

Fri 2/6

6:23 am-1:24 pm

1 stop9h 01m

Juneau Intl

Mon 2/9

7:20 am-11:55 pm

2 stops14h 35m

$494

MissoulaJuneau

MSO - JNU

MSOJNU

Missoula Johnson-Bell Field

Fri 2/6

6:23 am-1:24 pm

1 stop9h 01m

Juneau Intl

Mon 2/9

2:20 pm-11:55 pm

1 stop7h 35m

$499

Flights are sorted by cheapest round-trip flights first.

Sorted by cheapest first

When to book flights from Missoula to Juneau

Are you open to changing your travel dates? Check out the ideal times to fly from Missoula to Juneau according to our flight data. Find out which month and days have the cheapest flights.
Estimated round-trip price

Cheap Missoula to Juneau (MSO to JNU) flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Missoula to Juneau

Fastest flight time

26h 22m

Direct flights

None
The fastest flight from Missoula to Juneau takes 26h 22m
There are no direct flights from Missoula to Juneau. There are no popular flight routes from Missoula to Juneau.
  • How far is Missoula Johnson-Bell Field to Juneau Intl by plane?

    There are 1156.3 mi between Missoula Johnson-Bell Field and Juneau Intl. In terms of flight time, this usually takes a little over 26h 22m.

  • When did momondo last update prices for flights from Missoula Johnson-Bell Field Airport to Juneau Intl Airport?

    Prices for flights from Missoula Johnson-Bell Field Airport to Juneau Intl Airport are refreshed on a daily basis.

  • How many operators does momondo search for flights from Missoula Johnson-Bell Field Airport to Juneau Intl Airport?

  • How old do you have to be to fly from Missoula Johnson-Bell Field Airport to Juneau Intl Airport?

    The minimum age for a child to fly alone is five, but airlines that offer an unaccompanied minor (UNMR) service may have their own age limitations. Flight duration, scheduling, and layovers are among the considerations that may influence age limits. We recommend that you double-check with the airline you are booking with for travel from Missoula Johnson-Bell Field Airport to Juneau Intl Airport.

  • What documentation or ID do you need to fly to Juneau Intl Airport?

    The travel and health documents required for your trip to Juneau Intl Airport can vary based on your itinerary and personal situation. As a rule, consider having multiple documents such as a national ID card or driver’s license, and a passport valid for six-months after you plan to arrive at Juneau Intl Airport. We always recommend checking with your airline or a trusted third party such as IATA to get advice.

  • What is the most popular airline from Missoula to Juneau?

Best airlines flying from Missoula to Juneau

Compare and see reviews for airlines that fly from Missoula to Juneau with momondo
Airline
Rating
Free Cancellation
Price
Alaska AirlinesPriceFrom $505Free CancellationRating
8.0
11,432 reviews
Search Alaska Airlines flights
  • How do I get Price Alerts for flights from Missoula to Juneau?

    You can take advantage of momondo’s Price Alerts by first searching for your flights to Missoula from Juneau. Flight offers will be shown to you in real-time. From there you can create a Price Alert by using our on-site widget.

  • How can I save money on flights from Missoula to Juneau with momondo?

    With “Price Forecast”, learn how soon you should book your flight in advance. Down to the day of week and time of day, our information can inform you on the ideal time to book to save on your travel. Our “Price Calendar” shows you at a quick glance when to book your travel for lower rates. By setting “Price Alerts” you can monitor changes in price and target the ideal time to book. Search for your trip destination by budget amount via our “Explore” feature. Whether you’re looking for ideas for your next travel adventure or cost-cutting tips, our “Discover” content is a great place to start.

  • How does momondo find its flight prices?

    We show prices from over 700+ competitors with a single click. With options from airlines and OTAs from across our 30 international markets, we are able to show you a diverse range of deals to create your adventure.

Why use momondo?

Why should I use momondo to find a flight deal from Missoula to Juneau?

Finding the right flight to Juneau from Missoula is quick and easy when you have a range of options in front of you, from reputable agents and recognisable airlines. Options that can then be filtered down to find the best fit. That is what momondo does. We make finding flights to Juneau quick and easy, saving you time and money.

Can I find flights from Missoula to Juneau with flexible booking policies on momondo?

Yes. momondo allows you to filter the results for Missoula to Juneau flights to just show those with flexible booking policies.

How can momondo help me find flights from Missoula to Juneau?

momondo helps you find the best flight between Missoula and Juneau by providing filters to narrow your choice of flights to those matching your criteria. You can select flights based on numerous factors such as price, departure and landing times, airport and airline.

I’m not ready to book a flight from Missoula to Juneau right now. Can momondo alert me if prices change?

Of course. momondo tracks the price of Missoula to Juneau flights. All you need is a valid email address and we will do the rest; it is that quick and easy.

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1 adult
Sat 1/10
Sat 1/17

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