Cheap flights from San Francisco to Tokyo from $399

In general, January is the cheapest month to fly from San Francisco to Tokyo Haneda Airport. Due to it being the ‘off-season’ during this time, you can expect flight prices to be around $1,087. The month of February is another great option to travel to Tokyo Haneda Airport, with average flight prices from San Francisco averaging around $1,149.

According to our data, Tuesday is the cheapest day to fly to Tokyo Haneda Airport from San Francisco. The lowest ticket price found for a Tuesday departure recently was $1,181. Keep in mind that prices can always vary depending on your route and whether or not you are flying domestic or international. The most expensive day to fly to Tokyo Haneda Airport is Friday, with ticket prices averaging around $1,465.

Our data shows that the cheapest San Francisco to Tokyo Haneda Airport flights are usually those with departure times in the evening. Our users have found flights to Tokyo Haneda Airport in the evening for as low as $1,214. If you have a flexible travel schedule, then try to avoid flying at noon when prices are $1,334 on average. Flights to Tokyo Haneda Airport from San Francisco at noon are generally more expensive because this time of day is more convenient for travelers’ schedules.

Fly from San Francisco to Tokyo Haneda for the best San Francisco - Tokyo Haneda flight prices

You are more likely to see cheaper flights to Tokyo Haneda Airport from San Francisco when booking weeks ahead of your departure date. In general, you can expect to find flights to Tokyo Haneda Airport for around $1,307 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Tokyo Haneda Airport from San Francisco for as low as $1,237 on momondo.

There are 4 cabin classes available to choose from on San Francisco to Tokyo Haneda Airport flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Cathay Pacific, Delta, and United Airlines are the most popular carriers operating from San Francisco to Tokyo Haneda

Japan Airlines, ANA and United Airlines are the top three most popular airlines that fly to Tokyo Haneda Airport from San Francisco according to our data. Japan Airlines is the first choice among our users, with 40% of people opting to fly with this airline when traveling to Tokyo Haneda Airport. Keep in mind that there are 10 different airlines that fly to Tokyo Haneda Airport on a routine basis, so you have a few additional options to choose from.

Historically, on average around 10% of flights between San Francisco and Tokyo have experienced a delay on any given week. The average delay length over the past 12 months has been 179 minutes.

Generally, flights departing at night tend to experience fewer delays. Flights in the morning have, in the past, seen delays more frequently in comparison.

Sunday is statistically the day of the week which experiences the fewest number of delays on this flight route. Thursday has historically seen more delays on average compared to the rest of the week.

According to our data, ANA have had the least number of delays on this route over the last 12 months; with about 5% of their flights experiencing any sort of delay.

Hong Kong (HKG) was the most common stop: 35% of momondo users choosing 1-stop flights on this route connected there.

Flights via Hong Kong (HKG) offer the lowest average round-trip price of $790.

Flights connecting via Los Angeles (LAX) have the shortest average one-way travel time: 15h 32m.

Honolulu (HNL) has the shortest average layover time for this route: 1h 45m.

As of October 2026, there are 7 flights per day flying from San Francisco to Tokyo Haneda Airport. The most common time of day flights depart is 12:00PM, with 46% of flights taking off in the afternoon.

As of October 2026, there are 55 flights per week flying from San Francisco to Tokyo Haneda Airport. The most common day of the week flights depart is Mon, with 15% of flights taking off on this day.