Cheap flights from Boston to San Juan from $108

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from Boston to San Juan departing on 12/3. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
1 adult
0 bags

Discover deals from 900+ travel sites with momondo.

Save money when you book flights with momondo

Big names and deals

Big names and deals

Search 100s of travel sites to compare prices.

Filter for what you want

Filter for what you want

Free Wi-Fi? Stopover? Instantly customize your results.

Trusted and free

Trusted and free

We’re completely free to use - no hidden charges or fees.

Price Alerts

Price Alerts

Not ready to book? to track prices.

Find the cheapest flights from Boston to San Juan

Cheap round-trip flights

Enter your travel dates to find the best prices.
Frontier Logo
10:52 am - 12:49 amBOS-SJU
36h 57m2 stops
Frontier Logo
8:00 am - 11:23 amSJU-BOS
4h 23mnonstop
$181Frontier
Find Deal
Fri, Dec 12 - Thu, Dec 18
Multiple Airlines Logo
7:34 pm - 12:41 amBOS-SJU
4h 07mnonstop
Multiple Airlines Logo
3:55 am - 10:46 amSJU-BOS
7h 51m1 stop
$182Multiple Airlines
Find Deal
Wed, Jan 7 - Sun, Jan 11
Spirit Airlines Logo
3:18 pm - 8:24 pmBOS-SJU
4h 06mnonstop
Spirit Airlines Logo
10:52 am - 2:12 pmSJU-BOS
4h 20mnonstop
$183Spirit Airlines
Find Deal
Fri, Jan 9 - Fri, Jan 16
JetBlue Logo
6:55 pm - 11:54 pmBOS-SJU
3h 59mnonstop
JetBlue Logo
6:10 am - 9:19 amSJU-BOS
4h 09mnonstop
$184JetBlue
Find Deal
Tue, Dec 2 - Wed, Dec 10
Frontier Logo
6:00 am - 3:06 pmBOS-SJU
8h 06m1 stop
Frontier Logo
11:05 am - 10:11 amSJU-BOS
24h 06m1 stop
$185Frontier
Find Deal
Tue, Feb 10 - Thu, Feb 12
JetBlue Logo
6:55 pm - 11:54 pmBOS-SJU
3h 59mnonstop
JetBlue Logo
1:41 pm - 4:54 pmSJU-BOS
4h 13mnonstop
$186JetBlue
Find Deal
Wed, Dec 10 - Fri, Dec 12
Spirit Airlines Logo
3:18 pm - 8:24 pmBOS-SJU
4h 06mnonstop
Spirit Airlines Logo
6:00 am - 2:38 pmSJU-BOS
9h 38m1 stop
$187Spirit Airlines
Find Deal
Mon, Feb 2 - Tue, Feb 3
Multiple Airlines Logo
3:43 pm - 11:32 pmBOS-SJU
6h 49m1 stop
Multiple Airlines Logo
4:22 pm - 1:13 amSJU-BOS
9h 51m1 stop
$188Multiple Airlines
Find Deal
Wed, Jan 28 - Mon, Feb 9
Multiple Airlines Logo
3:43 pm - 11:32 pmBOS-SJU
6h 49m1 stop
Multiple Airlines Logo
6:11 pm - 1:13 amSJU-BOS
8h 02m1 stop
$189Multiple Airlines
Find Deal
Sat, Jan 17 - Sat, Jan 24
Multiple Airlines Logo
3:43 pm - 9:47 amBOS-SJU
17h 04m1 stop
Multiple Airlines Logo
3:55 am - 10:46 amSJU-BOS
7h 51m1 stop
$190Multiple Airlines
Find Deal
Fri, Jan 9 - Sun, Jan 11

Frontier flights from Boston to San Juan

Our best Frontier deals on Boston to San Juan flight tickets
Frontier
Dec 12
BOS10:52 amBoston Logan Intl
36h 57m
2 stops
SJU12:49 amSan Juan Luis Munoz Marin Intl
Dec 18
SJU8:00 amSan Juan Luis Munoz Marin Intl
4h 23m
BOS11:23 amBoston Logan Intl
Frontier
Feb 10
BOS6:00 amBoston Logan Intl
8h 06m
1 stop
SJU3:06 pmSan Juan Luis Munoz Marin Intl
Feb 12
SJU11:05 amSan Juan Luis Munoz Marin Intl
24h 06m
1 stop
BOS10:11 amBoston Logan Intl
Frontier
Feb 26
BOS10:24 amBoston Logan Intl
4h 04m
SJU3:28 pmSan Juan Luis Munoz Marin Intl
Mar 4
SJU4:11 pmSan Juan Luis Munoz Marin Intl
8h 54m
1 stop
BOS12:05 amBoston Logan Intl

Spirit Airlines flights from Boston to San Juan

Our best Spirit Airlines deals on Boston to San Juan flight tickets
Spirit Airlines
Jan 9
BOS3:18 pmBoston Logan Intl
4h 06m
SJU8:24 pmSan Juan Luis Munoz Marin Intl
Jan 16
SJU10:52 amSan Juan Luis Munoz Marin Intl
4h 20m
BOS2:12 pmBoston Logan Intl
Spirit Airlines
Dec 6
BOS10:56 amBoston Logan Intl
12h 20m
1 stop
SJU12:16 amSan Juan Luis Munoz Marin Intl
Dec 8
SJU6:14 pmSan Juan Luis Munoz Marin Intl
6h 42m
1 stop
BOS11:56 pmBoston Logan Intl
Spirit Airlines
Jan 17
BOS3:43 pmBoston Logan Intl
17h 04m
1 stop
SJU9:47 amSan Juan Luis Munoz Marin Intl
Jan 20
SJU6:00 amSan Juan Luis Munoz Marin Intl
9h 38m
1 stop
BOS2:38 pmBoston Logan Intl

momondo Fare Finder

 
Customize your flight search to find flights from Boston to San Juan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, momondo users made 832,500 searches. Data last updated November 26, 2025.
Use the filters below to find and compare flights from Boston to San Juan that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Fri 12/12

10:52 am-12:49 am

2 stops36h 57m

San Juan Luis Munoz Marin Intl

Thu 12/18

8:00 am-11:23 am

Nonstop4h 23m

$181

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Wed 1/7

7:34 pm-12:41 am

Nonstop4h 07m

San Juan Luis Munoz Marin Intl

Sun 1/11

3:55 am-10:46 am

1 stop7h 51m

$182

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Fri 1/9

3:18 pm-8:24 pm

Nonstop4h 06m

San Juan Luis Munoz Marin Intl

Fri 1/16

10:52 am-2:12 pm

Nonstop4h 20m

$183

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Tue 12/2

6:55 pm-11:54 pm

Nonstop3h 59m

San Juan Luis Munoz Marin Intl

Wed 12/10

6:10 am-9:19 am

Nonstop4h 09m

$184

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Tue 2/10

6:00 am-3:06 pm

1 stop8h 06m

San Juan Luis Munoz Marin Intl

Thu 2/12

11:05 am-10:11 am

1 stop24h 06m

$185

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Wed 12/10

6:55 pm-11:54 pm

Nonstop3h 59m

San Juan Luis Munoz Marin Intl

Fri 12/12

1:41 pm-4:54 pm

Nonstop4h 13m

$186

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Mon 2/2

3:18 pm-8:24 pm

Nonstop4h 06m

San Juan Luis Munoz Marin Intl

Tue 2/3

6:00 am-2:38 pm

1 stop9h 38m

$187

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Wed 1/28

3:43 pm-11:32 pm

1 stop6h 49m

San Juan Luis Munoz Marin Intl

Mon 2/9

4:22 pm-1:13 am

1 stop9h 51m

$188

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Sat 1/17

3:43 pm-11:32 pm

1 stop6h 49m

San Juan Luis Munoz Marin Intl

Sat 1/24

6:11 pm-1:13 am

1 stop8h 02m

$189

BostonSan Juan

BOS - SJU

BOSSJU

Boston Logan Intl

Fri 1/9

3:43 pm-9:47 am

1 stop17h 04m

San Juan Luis Munoz Marin Intl

Sun 1/11

3:55 am-10:46 am

1 stop7h 51m

$190

Flights are sorted by cheapest round-trip flights first.

Showing 1-10 of 20 resultsSorted by cheapest first
1
2

See travel insights to San Juan from

How to get the cheapest flight ticket from Boston to San Juan

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the typical price of a round-trip flight between Boston and San Juan?

What is the cheapest month to fly to San Juan?

If you’re not able to fly to San Juan in January, then March is your next best option. Flight prices from Boston to San Juan during March average around $264.

What is the cheapest day to depart on your flight to San Juan?

The cheapest day to depart from Boston to San Juan is on a Monday when prices can be found for as low as $296. The most expensive day to fly to San Juan is Friday, with ticket prices averaging around $338.

What is the cheapest time of day to depart on your flight to San Juan?

The cheapest time of day to fly to San Juan is in the morning when flights can be purchased for as low as $313. If you have a flexible travel schedule, then try to avoid flying at noon when prices are $348 on average. Flights to San Juan from Boston at noon are generally more expensive because this time of day is more convenient for travelers’ schedules.

What is the cheapest Boston Logan Intl to San Juan flight route?

Fly from Boston Logan Intl to San Juan Luis Munoz Marin Intl for the best Boston Logan Intl - San Juan flight prices

How far in advance should I book a flight to San Juan?

You are more likely to see cheaper flights to San Juan from Boston when booking weeks ahead of your departure date. In general, you can expect to find flights to San Juan for around $300 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to San Juan from Boston for as low as $256 on momondo.

What cabin class options are available on Boston Logan Intl to San Juan flights?

There are 4 cabin classes available to choose from on Boston Logan Intl to San Juan flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Cheap Boston to San Juan flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Boston to San Juan

Fastest flight time

3h 57m

Direct flights

Every day

Airports in San Juan

1 airport
The fastest flight from Boston to San Juan takes 3h 57m
Direct flights go from Boston to San Juan every day.
There is 1 airport near San Juan: San Juan Luis Munoz Marin Intl (SJU)
  • How far is Boston Logan Intl to San Juan by plane?

    San Juan is 1675.2 mi away from Boston Logan Intl. By plane, this route typically takes 3h 59m.

  • When did momondo last update prices for flights from Boston Logan Intl Airport to San Juan?

    Prices for flights from Boston Logan Intl Airport to San Juan were last updated today.

  • How many operators does momondo search for flights from Boston Logan Intl Airport to San Juan?

  • How old do you have to be to fly from Boston Logan Intl Airport to San Juan?

    The minimum age for a child to fly alone is five, but airlines that offer an unaccompanied minor (UNMR) service may have their own age limitations. Flight duration, scheduling, and layovers are among the considerations that may influence age limits. We recommend that you double-check with the airline you are booking with for travel from Boston Logan Intl Airport to San Juan.

  • What documentation or ID do you need to fly to San Juan?

    The travel and health documents required for your trip to San Juan can vary based on your itinerary and personal situation. As a rule, consider having multiple documents such as a national ID card or driver’s license, and a passport valid for six-months after you plan to arrive at San Juan. We always recommend checking with your airline or a trusted third party such as IATA to get advice.

Best airlines flying from Boston to San Juan

Compare and see reviews for airlines that fly from Boston to San Juan with momondo
Airline
Rating
Free Cancellation
Price
FrontierPriceFrom $87Free CancellationRating
5.8
3,099 reviews
Search Frontier flights
Spirit AirlinesPriceFrom $99Free CancellationRating
6.3
8,158 reviews
Search Spirit Airlines flights
DeltaPriceFrom $146Free CancellationRating
7.9
7,998 reviews
Search Delta flights
JetBluePriceFrom $175Free CancellationRating
7.2
2,905 reviews
Search JetBlue flights
United AirlinesPriceFrom $190Free CancellationRating
7.4
9,046 reviews
Search United Airlines flights
American AirlinesPriceFrom $288Free CancellationRating
7.2
11,038 reviews
Search American Airlines flights
SouthwestPriceFrom $383Free CancellationRating
8.0
4,254 reviews
Search Southwest flights

Why use momondo?

Why should I use momondo to find a flight deal from Boston to San Juan?

momondo collates all your flight options in one place and lets you filter them to find the perfect flight from Boston to San Juan. momondo saves you time and could save you money on your trip.

Can I find flights from Boston to San Juan with flexible booking policies on momondo?

Yes. momondo allows you to filter the results for Boston to San Juan flights to just show those with flexible booking policies.

How can momondo help me find flights from Boston to San Juan?

Once all potential Boston to San Juan flight options are in front of you, momondo lets you sort and filter flights based on preferences such as airline, price and flight times amongst many other options.

I’m not ready to book a flight from Boston to San Juan right now. Can momondo alert me if prices change?

Price alerts on flights to San Juan from Boston are quick and easy to set up on momondo. Simply perform a search and select the price alert feature. It is as simple as that.

An easier way to manage your San Juan trip

We make it super easy to schedule, organize and travel with friends or family. Trips is free — and available to use no matter where you book.

Get notified when prices go down

Daily price changes in your inbox - only with Price Alerts.
1 adult
Fri 12/26
Fri 1/2

Find better results for your trip to Puerto Rico

Fly into one of these airports located in San Juan

Airports listed have a maximum distance of 7.1 mi from San Juan