Cheap flights from Atlanta to San Juan from $125

If you’re not able to fly to San Juan in September, then August is your next best option. Flight prices from Atlanta to San Juan during August average around $113.

The cheapest day to depart from Atlanta to San Juan is on a Sunday when prices can be found for as low as $365. The most expensive day to fly to San Juan is Saturday, with ticket prices averaging around $418.

The cheapest time of day to fly to San Juan is in the morning when flights can be purchased for as low as $384. If you have a flexible travel schedule, then try to avoid flying at noon when prices are $486 on average. Flights to San Juan from Atlanta at noon are generally more expensive because this time of day is more convenient for travelers’ schedules.

Fly from Atlanta Hartsfield-Jackson to San Juan Luis Munoz Marin Intl for the best Atlanta Hartsfield-Jackson - San Juan flight prices

You are more likely to see cheaper flights to San Juan from Atlanta when booking weeks ahead of your departure date. In general, you can expect to find flights to San Juan for around $345 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to San Juan from Atlanta for as low as $292 on momondo.

There are 4 cabin classes available to choose from on Atlanta to San Juan flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Frontier and Southwest are the most popular carriers operating from Atlanta Hartsfield-Jackson to San Juan

Frontier, Delta and JetBlue are the top three most popular airlines that fly to San Juan from Atlanta according to our data. Frontier is the first choice among our users, with 57% of people opting to fly with this airline when traveling to San Juan. Keep in mind that there are 5 different airlines that fly to San Juan on a routine basis, so you have a few additional options to choose from.

Historically, on average around 26% of flights between Atlanta and San Juan have experienced a delay on any given week. The average delay length over the past 12 months has been 132 minutes.

Generally, flights departing in the morning tend to experience fewer delays. Flights in the evening have, in the past, seen delays more frequently in comparison.

Wednesday is statistically the day of the week which experiences the fewest number of delays on this flight route. Saturday has historically seen more delays on average compared to the rest of the week.

According to our data, Delta have had the least number of delays on this route over the last 12 months; with about 21% of their flights experiencing any sort of delay.

The number of flights available between Atlanta and San Juan is 15 per day as of June 2026. The most frequent departure time is 4:00PM, with 38% of daily flights leaving in the afternoon.

The number of flights available between Atlanta and San Juan is 111 per week as of June 2026. The most frequent departure day is Mon, with 18% of weekly flights leaving on this day.