Cheap flights from San Juan to New York from $126

The cheapest month to fly to New York from San Juan is in October. Flight prices, which tend to average around $199, are often lower during this time because this is during the off-season. The month of February is another great option to travel to New York, with average flight prices from San Juan averaging around $205.

The cheapest day to depart from San Juan to New York is on a Friday when prices can be found for as low as $269. On the other hand, Sunday is the most expensive day to depart from San Juan because it is more convenient for both business and leisure travelers. As a result, prices tend to be around $393.

Our most recent data shows that the best time of day to fly to New York is in the afternoon. Flights from San Juan to New York during this time can be as low as $260. Flights to New York are more costly at noon, with an average ticket price of $474. Departure times at noon fall within the peak daily travel times, which is why tickets can be more expensive.

Fly from San Juan Luis Munoz Marin Intl to New York John F Kennedy Intl for the best San Juan - New York flight prices

You are more likely to see cheaper flights to New York from San Juan when booking weeks ahead of your departure date. In general, you can expect to find flights to New York for around $280 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to New York from San Juan for as low as $257 on momondo.

There are 4 cabin classes available to choose from on San Juan to New York flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

United Airlines, Delta, and Southwest are the most popular carriers operating from San Juan to New York

JetBlue, Frontier and Delta are the top three most popular airlines that fly to New York from San Juan according to our data. JetBlue is the first choice among our users, with 46% of people opting to fly with this airline when traveling to New York. Keep in mind that there are 5 different airlines that fly to New York on a routine basis, so you have a few additional options to choose from.

Historically, on average around 14% of flights between San Juan and New York have experienced a delay on any given week. The average delay length over the past 12 months has been 171 minutes.

Generally, flights departing in the morning tend to experience fewer delays. Flights in the evening have, in the past, seen delays more frequently in comparison.

Wednesday is statistically the day of the week which experiences the fewest number of delays on this flight route. Sunday has historically seen more delays on average compared to the rest of the week.

According to our data, Delta have had the least number of delays on this route over the last 12 months; with about 6% of their flights experiencing any sort of delay.

As of July 2026, there are 55 flights per day flying from San Juan to New York. The most common time of day flights depart is 1:00PM, with 52% of flights taking off in the afternoon.

391 flights are operational weekly from San Juan to New York as of July 2026. The most popular departure day for this route is Mon, with 17% of flights per week taking off on this day.