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Cheap flights from New York to San Juan from $69

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from New York to San Juan departing on 2/3. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
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0 bags

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Find the cheapest flights from New York to San Juan

Cheap round-trip flights

Enter your travel dates to find the best prices.
Frontier Logo
1:00 pm - 5:58 pm
JFK
-
SJU
3h 58mnonstop
Frontier Logo
8:50 am - 12:04 pm
SJU
-
JFK
4h 14mnonstop
$138Frontier
Wed, Feb 4 - Sat, Feb 14
Frontier Logo
1:00 pm - 5:58 pm
JFK
-
SJU
3h 58mnonstop
Frontier Logo
8:50 am - 12:04 pm
SJU
-
JFK
4h 14mnonstop
$139Frontier
Sat, Jan 31 - Tue, Feb 10
Spirit Airlines Logo
7:30 am - 6:49 pm
LGA
-
SJU
10h 19m1 stop
Spirit Airlines Logo
11:52 am - 7:00 pm
SJU
-
LGA
8h 08m1 stop
$139Spirit Airlines
Sat, Jan 31 - Sat, Feb 7
Spirit Airlines Logo
6:30 am - 11:33 pm
LGA
-
SJU
16h 03m1 stop
Spirit Airlines Logo
11:52 am - 7:00 pm
SJU
-
LGA
8h 08m1 stop
$140Spirit Airlines
Thu, Jan 22 - Thu, Jan 29
Frontier Logo
1:00 pm - 5:58 pm
JFK
-
SJU
3h 58mnonstop
Frontier Logo
8:50 am - 12:04 pm
SJU
-
JFK
4h 14mnonstop
$140Frontier
Wed, Feb 4 - Sat, Feb 14
Frontier Logo
1:00 pm - 5:58 pm
JFK
-
SJU
3h 58mnonstop
Frontier Logo
8:50 am - 12:04 pm
SJU
-
JFK
4h 14mnonstop
$141Frontier
Tue, Feb 3 - Wed, Feb 11
Spirit Airlines Logo
7:30 am - 6:49 pm
LGA
-
SJU
10h 19m1 stop
Spirit Airlines Logo
4:40 pm - 11:48 pm
SJU
-
LGA
8h 08m1 stop
$141Spirit Airlines
Tue, Jan 27 - Wed, Feb 4
Multiple Airlines Logo
10:02 am - 6:58 pm
JFK
-
SJU
7h 56m1 stop
Multiple Airlines Logo
8:50 am - 12:04 pm
SJU
-
JFK
4h 14mnonstop
$142Multiple Airlines
Thu, Feb 5 - Wed, Feb 11
Multiple Airlines Logo
6:50 pm - 11:50 pm
JFK
-
SJU
4h 00mnonstop
Multiple Airlines Logo
8:50 am - 12:04 pm
SJU
-
JFK
4h 14mnonstop
$143Multiple Airlines
Mon, Jan 26 - Tue, Feb 3
Multiple Airlines Logo
7:59 pm - 9:47 am
LGA
-
SJU
12h 48m1 stop
Multiple Airlines Logo
11:49 am - 9:29 pm
SJU
-
LGA
10h 40m1 stop
$143Multiple Airlines
Tue, Jan 27 - Sat, Jan 31

Delta flights from New York to San Juan

Our best Delta deals on New York to San Juan flight tickets
Delta
Jan 22
JFK12:25 pmNew York John F Kennedy Intl
7h 33m
1 stop
SJU8:58 pmSan Juan Luis Munoz Marin Intl
Jan 29
SJU7:00 amSan Juan Luis Munoz Marin Intl
4h 07m
JFK10:07 amNew York John F Kennedy Intl
$183
Delta
Jan 23
JFK12:29 pmNew York John F Kennedy Intl
7h 29m
1 stop
SJU8:58 pmSan Juan Luis Munoz Marin Intl
Jan 30
SJU6:27 pmSan Juan Luis Munoz Marin Intl
7h 23m
1 stop
JFK12:50 amNew York John F Kennedy Intl
$187

Frontier flights from New York to San Juan

Our best Frontier deals on New York to San Juan flight tickets
Frontier
Feb 4
JFK1:00 pmNew York John F Kennedy Intl
3h 58m
SJU5:58 pmSan Juan Luis Munoz Marin Intl
Feb 14
SJU8:50 amSan Juan Luis Munoz Marin Intl
4h 14m
JFK12:04 pmNew York John F Kennedy Intl
$138
Frontier
Jan 31
JFK1:00 pmNew York John F Kennedy Intl
3h 58m
SJU5:58 pmSan Juan Luis Munoz Marin Intl
Feb 10
SJU8:50 amSan Juan Luis Munoz Marin Intl
4h 14m
JFK12:04 pmNew York John F Kennedy Intl
$139
Frontier
Jan 11
JFK11:20 amNew York John F Kennedy Intl
3h 54m
SJU4:14 pmSan Juan Luis Munoz Marin Intl
Jan 14
SJU7:15 amSan Juan Luis Munoz Marin Intl
4h 14m
JFK10:29 amNew York John F Kennedy Intl
$140

momondo Fare Finder

 
Customize your flight search to find flights from New York to San Juan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, momondo users made 832,500 searches. Data last updated January 8, 2026.
Use the filters below to find and compare flights from New York to San Juan that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

New YorkSan Juan

JFK - SJU

JFKSJU

New York John F Kennedy Intl

Wed 2/4

1:00 pm-5:58 pm

Nonstop3h 58m

San Juan Luis Munoz Marin Intl

Sat 2/14

8:50 am-12:04 pm

Nonstop4h 14m

$138

New YorkSan Juan

JFK - SJU

JFKSJU

New York John F Kennedy Intl

Sat 1/31

1:00 pm-5:58 pm

Nonstop3h 58m

San Juan Luis Munoz Marin Intl

Tue 2/10

8:50 am-12:04 pm

Nonstop4h 14m

$139

New YorkSan Juan

LGA - SJU

LGASJU

New York LaGuardia

Sat 1/31

7:30 am-6:49 pm

1 stop10h 19m

San Juan Luis Munoz Marin Intl

Sat 2/7

11:52 am-7:00 pm

1 stop8h 08m

$139

New YorkSan Juan

LGA - SJU

LGASJU

New York LaGuardia

Thu 1/22

6:30 am-11:33 pm

1 stop16h 03m

San Juan Luis Munoz Marin Intl

Thu 1/29

11:52 am-7:00 pm

1 stop8h 08m

$140

New YorkSan Juan

JFK - SJU

JFKSJU

New York John F Kennedy Intl

Wed 2/4

1:00 pm-5:58 pm

Nonstop3h 58m

San Juan Luis Munoz Marin Intl

Sat 2/14

8:50 am-12:04 pm

Nonstop4h 14m

$140

New YorkSan Juan

JFK - SJU

JFKSJU

New York John F Kennedy Intl

Tue 2/3

1:00 pm-5:58 pm

Nonstop3h 58m

San Juan Luis Munoz Marin Intl

Wed 2/11

8:50 am-12:04 pm

Nonstop4h 14m

$141

New YorkSan Juan

LGA - SJU

LGASJU

New York LaGuardia

Tue 1/27

7:30 am-6:49 pm

1 stop10h 19m

San Juan Luis Munoz Marin Intl

Wed 2/4

4:40 pm-11:48 pm

1 stop8h 08m

$141

New YorkSan Juan

JFK - SJU

JFKSJU

New York John F Kennedy Intl

Thu 2/5

10:02 am-6:58 pm

1 stop7h 56m

San Juan Luis Munoz Marin Intl

Wed 2/11

8:50 am-12:04 pm

Nonstop4h 14m

$142

New YorkSan Juan

JFK - SJU

JFKSJU

New York John F Kennedy Intl

Mon 1/26

6:50 pm-11:50 pm

Nonstop4h 00m

San Juan Luis Munoz Marin Intl

Tue 2/3

8:50 am-12:04 pm

Nonstop4h 14m

$143

New YorkSan Juan

LGA - SJU

LGASJU

New York LaGuardia

Tue 1/27

7:59 pm-9:47 am

1 stop12h 48m

San Juan Luis Munoz Marin Intl

Sat 1/31

11:49 am-9:29 pm

1 stop10h 40m

$143

Flights are sorted by cheapest round-trip flights first.

Showing 1-10 of 20 resultsSorted by cheapest first
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See travel insights to San Juan from

How to get the cheapest flight ticket from New York to San Juan

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the cheapest month to fly to San Juan?

If you’re not able to fly to San Juan in March, then May is your next best option. Flight prices from New York to San Juan during May average around $216.

What is the cheapest day to depart on your flight to San Juan?

The cheapest day to depart from New York to San Juan is on a Tuesday when prices can be found for as low as $256. The most expensive day to fly to San Juan is Thursday, with ticket prices averaging around $313.

What is the cheapest time of day to depart on your flight to San Juan?

The cheapest time of day to fly to San Juan is at noon when flights can be purchased for as low as $227. If you have a flexible travel schedule, then try to avoid flying in the evening when prices are $296 on average. Flights to San Juan from New York in the evening are generally more expensive because this time of day is more convenient for travelers’ schedules.

What is the cheapest New York to San Juan flight route?

Fly from New York LaGuardia to San Juan Luis Munoz Marin Intl for the best New York - San Juan flight prices

How far in advance should I book a flight to San Juan?

You are more likely to see cheaper flights to San Juan from New York when booking weeks ahead of your departure date. In general, you can expect to find flights to San Juan for around $264 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to San Juan from New York for as low as $239 on momondo.

What cabin class options are available on New York to San Juan flights?

There are 4 cabin classes available to choose from on New York to San Juan flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Cheap New York to San Juan flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from New York to San Juan

Fastest flight time

3h 43m

Direct flights

Every day

Airports in San Juan

2 airports
The fastest flight from New York to San Juan takes 3h 43m
Direct flights go from New York to San Juan every day.
There are 2 airports in San Juan. From New York there are direct flights to San Juan Luis Munoz Marin Intl (SJU).
Search flight deals

  • How far is New York to San Juan by plane?

    There are 1608.4 mi between New York and San Juan. 3h 43m is a normal flight duration for this route.

  • When did momondo last update prices for flights from New York to San Juan?

    Prices for flights from New York to San Juan refresh daily.

  • How many operators does momondo search for flights from New York to San Juan?

  • How old do you have to be to fly from New York to San Juan?

    The minimum age a child must be to fly alone is five but airlines that offer an unaccompanied minor (UNMR) service will have their own age restrictions, including rules around flight length, timings, and stopovers. We always recommend checking with the individual airline you are booking with to travel from New York to San Juan.

  • What documentation or ID do you need to fly to San Juan?

    The travel and health documents you'll need for your trip to San Juan may differ based on your itinerary and personal situation. Typically, you should have several documents on hand, such as a national ID card or driver's license and a passport that is valid for six months after your intended arrival at San Juan. It is always advisable to seek advice from your airline or a trusted third party, such as IATA.

Best airlines flying from New York to San Juan

Compare and see reviews for airlines that fly from New York to San Juan with momondo
Airline
Rating
Free Cancellation
Price
FrontierPriceFrom $62Free CancellationRating
5.7
3,061 reviews
Search Frontier flights
DeltaPriceFrom $120Free CancellationRating
7.9
8,031 reviews
Search Delta flights
Spirit AirlinesPriceFrom $143Free CancellationRating
6.3
8,289 reviews
Search Spirit Airlines flights
JetBluePriceFrom $144Free CancellationRating
7.2
2,892 reviews
Search JetBlue flights
American AirlinesPriceFrom $161Free CancellationRating
7.2
11,095 reviews
Search American Airlines flights
United AirlinesPriceFrom $163Free CancellationRating
7.4
9,142 reviews
Search United Airlines flights

Why use momondo?

Why should I use momondo to find a flight deal from New York to San Juan?

momondo compares prices from hundreds of airlines and agents so you can find and book the best deal on flights from New York to San Juan. Millions of users trust and use momondo every year so you are in good hands.

Can I find flights from New York to San Juan with flexible booking policies on momondo?

Flights from New York to San Juan with flexible booking policies can be found by using the search form above and then selecting our dedicated flexible booking filter, which will highlight only the flights where this policy is applied.

How can momondo help me find flights from New York to San Juan?

Once all potential New York to San Juan flight options are in front of you, momondo lets you sort and filter flights based on preferences such as airline, price and flight times amongst many other options.

I’m not ready to book a flight from New York to San Juan right now. Can momondo alert me if prices change?

Price alerts on flights to San Juan from New York are quick and easy to set up on momondo. Simply perform a search and select the price alert feature. It is as simple as that.

An easier way to manage your San Juan trip

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Find better results for your trip to Puerto Rico

Fly into one of these airports located in San Juan

Airports listed have a maximum distance of 7.1 mi from San Juan
San Juan Isla Grande Airport
San Juan Luis Munoz Marin Intl Airport