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Cheap flights from Jacksonville to San Juan from $87

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from Jacksonville to San Juan departing on 3/14. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
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0 bags

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Find the cheapest flights from Jacksonville to San Juan

Cheap round-trip flights

Enter your travel dates to find the best prices.
American Airlines Logo
6:00 am - 5:01 pm
JAX
-
SJU
10h 01m2 stops
American Airlines Logo
8:20 am - 10:09 pm
SJU
-
JAX
14h 49m1 stop
$200American Airlines
Thu, Jan 29 - Thu, Feb 5
American Airlines Logo
6:00 am - 8:50 pm
JAX
-
SJU
13h 50m1 stop
American Airlines Logo
7:12 pm - 9:03 am
SJU
-
JAX
14h 51m1 stop
$202American Airlines
Tue, Jan 27 - Fri, Jan 30
Frontier Logo
9:04 pm - 7:26 pm
JAX
-
SJU
21h 22m1 stop
Frontier Logo
12:55 pm - 8:01 pm
SJU
-
JAX
8h 06m1 stop
$203Frontier
Thu, Jan 29 - Mon, Feb 2
Frontier Logo
9:04 pm - 7:26 pm
JAX
-
SJU
21h 22m1 stop
Frontier Logo
12:55 pm - 8:01 pm
SJU
-
JAX
8h 06m1 stop
$204Frontier
Thu, Jan 29 - Mon, Feb 2
Frontier Logo
10:51 pm - 10:45 am
JAX
-
SJU
10h 54m1 stop
Frontier Logo
2:59 am - 3:38 pm
SJU
-
JAX
13h 39m1 stop
$206Frontier
Sun, Mar 1 - Fri, Mar 6
Delta Logo
3:12 pm - 11:45 pm
JAX
-
SJU
7h 33m1 stop
Delta Logo
6:27 pm - 11:59 pm
SJU
-
JAX
6h 32m1 stop
$208Delta
Thu, Jan 22 - Wed, Jan 28
Multiple Airlines Logo
9:04 pm - 7:26 pm
JAX
-
SJU
21h 22m1 stop
Multiple Airlines Logo
7:10 am - 6:33 pm
SJU
-
JAX
36h 23m2 stops
$209Multiple Airlines
Thu, Jan 29 - Tue, Feb 3
Frontier Logo
4:04 pm - 12:44 am
JAX
-
SJU
8h 40m1 stop
Frontier Logo
10:55 am - 10:00 pm
SJU
-
JAX
11h 05m1 stop
$211Frontier
Sat, Mar 14 - Thu, Mar 19
Multiple Airlines Logo
8:56 pm - 12:45 pm
JAX
-
SJU
14h 49m1 stop
Multiple Airlines Logo
8:15 am - 6:15 pm
SJU
-
JAX
11h 00m1 stop
$212Multiple Airlines
Mon, Jan 26 - Wed, Jan 28
Delta Logo
8:35 am - 4:15 pm
JAX
-
SJU
7h 40m1 stop
Delta Logo
6:15 am - 2:48 pm
SJU
-
JAX
8h 33m1 stop
$216Delta
Wed, May 6 - Wed, May 13

JetBlue flights from Jacksonville to San Juan

Our best JetBlue deals on Jacksonville to San Juan flight tickets
JetBlue
May 6
JAX4:55 pmJacksonville
2h 58m
SJU7:53 pmSan Juan Luis Munoz Marin Intl
May 9
SJU12:30 pmSan Juan Luis Munoz Marin Intl
3h 28m
JAX3:58 pmJacksonville
$225
JetBlue
Mar 18
JAX7:10 pmJacksonville
7h 17m
1 stop
SJU2:27 amSan Juan Luis Munoz Marin Intl
Mar 25
SJU4:22 pmSan Juan Luis Munoz Marin Intl
8h 21m
1 stop
JAX12:43 amJacksonville
$237
JetBlue
May 6
JAX4:55 pmJacksonville
2h 58m
SJU7:53 pmSan Juan Luis Munoz Marin Intl
May 12
SJU12:00 pmSan Juan Luis Munoz Marin Intl
9h 19m
1 stop
JAX9:19 pmJacksonville
$240

Frontier flights from Jacksonville to San Juan

Our best Frontier deals on Jacksonville to San Juan flight tickets
Frontier
Jan 29
JAX9:04 pmJacksonville
21h 22m
1 stop
SJU7:26 pmSan Juan Luis Munoz Marin Intl
Feb 2
SJU12:55 pmSan Juan Luis Munoz Marin Intl
8h 06m
1 stop
JAX8:01 pmJacksonville
$203
Frontier
Jan 29
JAX9:04 pmJacksonville
21h 22m
1 stop
SJU7:26 pmSan Juan Luis Munoz Marin Intl
Feb 2
SJU12:55 pmSan Juan Luis Munoz Marin Intl
8h 06m
1 stop
JAX8:01 pmJacksonville
$204
Frontier
Mar 1
JAX10:51 pmJacksonville
10h 54m
1 stop
SJU10:45 amSan Juan Luis Munoz Marin Intl
Mar 13
SJU1:59 amSan Juan Luis Munoz Marin Intl
13h 20m
1 stop
JAX3:19 pmJacksonville
$206

momondo Fare Finder

 
Customize your flight search to find flights from Jacksonville to San Juan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, momondo users made 832,500 searches. Data last updated January 8, 2026.
Use the filters below to find and compare flights from Jacksonville to San Juan that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Thu 1/29

6:00 am-5:01 pm

2 stops10h 01m

San Juan Luis Munoz Marin Intl

Thu 2/5

8:20 am-10:09 pm

1 stop14h 49m

$200

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Tue 1/27

6:00 am-8:50 pm

1 stop13h 50m

San Juan Luis Munoz Marin Intl

Fri 1/30

7:12 pm-9:03 am

1 stop14h 51m

$202

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Thu 1/29

9:04 pm-7:26 pm

1 stop21h 22m

San Juan Luis Munoz Marin Intl

Mon 2/2

12:55 pm-8:01 pm

1 stop8h 06m

$203

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Thu 1/29

9:04 pm-7:26 pm

1 stop21h 22m

San Juan Luis Munoz Marin Intl

Mon 2/2

12:55 pm-8:01 pm

1 stop8h 06m

$204

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Sun 3/1

10:51 pm-10:45 am

1 stop10h 54m

San Juan Luis Munoz Marin Intl

Fri 3/6

2:59 am-3:38 pm

1 stop13h 39m

$206

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Thu 1/22

3:12 pm-11:45 pm

1 stop7h 33m

San Juan Luis Munoz Marin Intl

Wed 1/28

6:27 pm-11:59 pm

1 stop6h 32m

$208

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Thu 1/29

9:04 pm-7:26 pm

1 stop21h 22m

San Juan Luis Munoz Marin Intl

Tue 2/3

7:10 am-6:33 pm

2 stops36h 23m

$209

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Sat 3/14

4:04 pm-12:44 am

1 stop8h 40m

San Juan Luis Munoz Marin Intl

Thu 3/19

10:55 am-10:00 pm

1 stop11h 05m

$211

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Mon 1/26

8:56 pm-12:45 pm

1 stop14h 49m

San Juan Luis Munoz Marin Intl

Wed 1/28

8:15 am-6:15 pm

1 stop11h 00m

$212

JacksonvilleSan Juan

JAX - SJU

JAXSJU

Jacksonville

Wed 5/6

8:35 am-4:15 pm

1 stop7h 40m

San Juan Luis Munoz Marin Intl

Wed 5/13

6:15 am-2:48 pm

1 stop8h 33m

$216

Flights are sorted by cheapest round-trip flights first.

Showing 1-10 of 20 resultsSorted by cheapest first
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See travel insights to San Juan from

How to get the cheapest flight ticket from Jacksonville to San Juan

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the cheapest month to fly to San Juan?

If you’re not able to fly to San Juan in August, then March is your next best option. Flight prices from Jacksonville to San Juan during March average around $250.

What is the cheapest day to depart on your flight to San Juan?

The cheapest day to depart from Jacksonville to San Juan is on a Sunday when prices can be found for as low as $240. The most expensive day to fly to San Juan is Tuesday, with ticket prices averaging around $311.

What is the cheapest time of day to depart on your flight to San Juan?

The cheapest time of day to fly to San Juan is at noon when flights can be purchased for as low as $238. If you have a flexible travel schedule, then try to avoid flying in the afternoon when prices are $262 on average. Flights to San Juan from Jacksonville in the afternoon are generally more expensive because this time of day is more convenient for travelers’ schedules.

What is the cheapest Jacksonville to San Juan flight route?

Fly from Jacksonville to San Juan Luis Munoz Marin Intl for the best Jacksonville - San Juan flight prices

How far in advance should I book a flight to San Juan?

You are more likely to see cheaper flights to San Juan from Jacksonville when booking weeks ahead of your departure date. In general, you can expect to find flights to San Juan for around $300 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to San Juan from Jacksonville for as low as $242 on momondo.

What cabin class options are available on Jacksonville to San Juan flights?

There are 2 cabin classes available to choose from on Jacksonville to San Juan flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Cheap Jacksonville to San Juan flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Jacksonville to San Juan

Fastest flight time

2h 50m

Direct flights

Tue, Thu, Sat and Sun

Airports in San Juan

2 airports
The fastest flight from Jacksonville to San Juan takes 2h 50m
Direct flights go from Jacksonville to San Juan on Tuesday, Thursday, Saturday and Sunday. There are no airlines offering direct flights.
There are 2 airports in San Juan. From Jacksonville there are direct flights to San Juan Luis Munoz Marin Intl (SJU).
Search flight deals

  • How far is Jacksonville to San Juan by plane?

    San Juan is 1273.0 mi away from Jacksonville. In terms of flight time, this usually takes a little over 2h 50m.

  • When did momondo last update prices for flights from Jacksonville Airport to San Juan?

    Prices for flights from Jacksonville Airport to San Juan refresh daily.

  • How many operators does momondo search for flights from Jacksonville Airport to San Juan?

  • How old do you have to be to fly from Jacksonville Airport to San Juan?

    Although the minimum age for a child to fly alone is five, airlines that offer an unaccompanied minor (UMNR) service may have their own age limits, which could be impacted by factors such as flight length, timing, and layovers. It is recommended that you verify with the airline you are booking with for travel from Jacksonville Airport to San Juan.

  • What documentation or ID do you need to fly to San Juan?

    The necessary travel and health documents for your San Juan trip may vary depending on your travel plans and individual circumstances. Generally, you should have various documents, such as a national ID card or driver's license and a passport that is valid for six months beyond your scheduled arrival date. We recommend seeking advice from your airline or a trusted third party, such as IATA.

Best airlines flying from Jacksonville to San Juan

Compare and see reviews for airlines that fly from Jacksonville to San Juan with momondo
Airline
Rating
Free Cancellation
Price
DeltaPriceFrom $110Free CancellationRating
7.9
8,025 reviews
Search Delta flights
FrontierPriceFrom $119Free CancellationRating
5.7
3,062 reviews
Search Frontier flights
JetBluePriceFrom $169Free CancellationRating
7.2
2,896 reviews
Search JetBlue flights
United AirlinesPriceFrom $208Free CancellationRating
7.4
9,139 reviews
Search United Airlines flights
American AirlinesPriceFrom $233Free CancellationRating
7.2
11,095 reviews
Search American Airlines flights
SouthwestPriceFrom $273Free CancellationRating
8.0
4,248 reviews
Search Southwest flights

Why use momondo?

Why should I use momondo to find a flight deal from Jacksonville to San Juan?

It is quick and easy to find Jacksonville to San Juan flights on momondo. We search and return numerous flight options from various airlines and agents. You can then use our filters to narrow your search until you have found the most convenient flight to San Juan that suits you.

Can I find flights from Jacksonville to San Juan with flexible booking policies on momondo?

Yes. All flights to San Juan from Jacksonville on momondo can be compared and filtered by various policies on offer, including flexible booking.

How can momondo help me find flights from Jacksonville to San Juan?

Once you have performed a search in the form on the page, momondo provides useful filters and insights. We can show you the cheapest days and times to fly as well as help filter your options to help you make an informed choice when booking flights to San Juan from Jacksonville.

I’m not ready to book a flight from Jacksonville to San Juan right now. Can momondo alert me if prices change?

If you are not ready to book a flight from Jacksonville to San Juan now, use our insights above to find helpful tips or alternatively set up a price alert, where momondo will track prices on flights to San Juan and let you know when they change.

An easier way to manage your San Juan trip

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Find better results for your trip to Puerto Rico

Fly into one of these airports located in San Juan

Airports listed have a maximum distance of 7.1 mi from San Juan
San Juan Isla Grande Airport
San Juan Luis Munoz Marin Intl Airport