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Cheap flights from Fort Myers to San Juan from $88

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from Fort Myers to San Juan departing on 5/2. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
1 adult
1 adult, Economy, 0 bags

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Find the cheapest flights from Fort Myers to San Juan

Cheap round-trip flights

Enter your travel dates to find the best prices.
Frontier Logo
11:40 am - 12:29 am
RSW
-
SJU
12h 49m
1 stop
Frontier Logo
6:30 am - 7:16 pm
SJU
-
RSW
12h 46m
1 stop
$186Frontier
Sat, May 2 - Thu, May 7
Frontier Logo
11:30 am - 12:29 am
RSW
-
SJU
12h 59m
1 stop
Frontier Logo
1:59 am - 10:45 am
SJU
-
RSW
8h 46m
1 stop
$210Frontier
Fri, Apr 24 - Thu, Apr 30
Frontier Logo
11:30 am - 12:29 am
RSW
-
SJU
12h 59m
1 stop
Frontier Logo
6:30 am - 7:16 pm
SJU
-
RSW
12h 46m
1 stop
$220Frontier
Fri, May 1 - Thu, May 7
Frontier Logo
11:40 am - 12:29 am
RSW
-
SJU
12h 49m
1 stop
Frontier Logo
1:59 am - 10:45 am
SJU
-
RSW
8h 46m
1 stop
$244Frontier
Sat, Apr 18 - Fri, Apr 24
Multiple Airlines Logo
6:00 am - 3:04 pm
RSW
-
SJU
9h 04m
1 stop
Multiple Airlines Logo
4:34 pm - 10:17 am
SJU
-
RSW
17h 43m
1 stop
$250Multiple Airlines
Sun, Apr 12 - Sun, Apr 19
Frontier Logo
6:00 am - 3:04 pm
RSW
-
SJU
9h 04m
1 stop
Frontier Logo
1:59 am - 10:45 am
SJU
-
RSW
8h 46m
1 stop
$255Frontier
Sun, Apr 12 - Wed, Apr 15
Frontier Logo
8:01 pm - 4:01 am
RSW
-
SJU
8h 00m
1 stop
Frontier Logo
6:44 am - 7:21 pm
SJU
-
RSW
12h 37m
1 stop
$260Frontier
Sun, May 31 - Sun, Jun 14
Frontier Logo
8:16 pm - 3:57 am
RSW
-
SJU
7h 41m
1 stop
Frontier Logo
6:44 am - 7:21 pm
SJU
-
RSW
12h 37m
1 stop
$276Frontier
Thu, Jun 11 - Sun, Jun 14
Frontier Logo
11:35 am - 12:29 am
RSW
-
SJU
12h 54m
1 stop
Frontier Logo
7:17 pm - 10:45 am
SJU
-
RSW
15h 28m
1 stop
$280Frontier
Sun, Apr 26 - Sun, May 3
Frontier Logo
8:01 pm - 4:01 am
RSW
-
SJU
8h 00m
1 stop
Frontier Logo
6:30 am - 7:16 pm
SJU
-
RSW
12h 46m
1 stop
$281Frontier
Sun, May 10 - Thu, May 14

Delta flights from Fort Myers to San Juan

Our best Delta deals on Fort Myers to San Juan flight tickets
Delta
May 3
RSW5:30 amFort Myers SW Florida Intl
6h 15m
1 stop
SJU11:45 amSan Juan Luis Munoz Marin Intl
May 8
SJU6:15 amSan Juan Luis Munoz Marin Intl
10h 35m
1 stop
RSW4:50 pmFort Myers SW Florida Intl
$296
Delta
May 12
RSW3:41 pmFort Myers SW Florida Intl
6h 36m
1 stop
SJU10:17 pmSan Juan Luis Munoz Marin Intl
May 16
SJU2:48 pmSan Juan Luis Munoz Marin Intl
9h 39m
1 stop
RSW12:27 amFort Myers SW Florida Intl
$388
Delta
Apr 17
RSW1:46 pmFort Myers SW Florida Intl
6h 38m
1 stop
SJU8:24 pmSan Juan Luis Munoz Marin Intl
Apr 19
SJU5:34 pmSan Juan Luis Munoz Marin Intl
7h 14m
1 stop
RSW12:48 amFort Myers SW Florida Intl
$510

Southwest flights from Fort Myers to San Juan

Our best Southwest deals on Fort Myers to San Juan flight tickets
Southwest
Apr 27
RSW12:55 pmFort Myers SW Florida Intl
10h 30m
2 stops
SJU11:25 pmSan Juan Luis Munoz Marin Intl
Apr 30
SJU2:00 pmSan Juan Luis Munoz Marin Intl
8h 00m
1 stop
RSW10:00 pmFort Myers SW Florida Intl
$311
Southwest
May 6
RSW6:45 amFort Myers SW Florida Intl
11h 25m
2 stops
SJU6:10 pmSan Juan Luis Munoz Marin Intl
May 10
SJU9:55 amSan Juan Luis Munoz Marin Intl
11h 45m
1 stop
RSW9:40 pmFort Myers SW Florida Intl
$344
Southwest
May 1
RSW12:55 pmFort Myers SW Florida Intl
11h 00m
2 stops
SJU11:55 pmSan Juan Luis Munoz Marin Intl
May 7
SJU5:05 amSan Juan Luis Munoz Marin Intl
11h 10m
2 stops
RSW4:15 pmFort Myers SW Florida Intl
$353

momondo Fare Finder

 
Customize your flight search to find flights from Fort Myers to San Juan that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, momondo users made 832,500 searches. Data last updated April 9, 2026.
Use the filters below to find and compare flights from Fort Myers to San Juan that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Cheapest round-trip

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Sat 5/2

11:40 am-12:29 am

1 stop12h 49m

San Juan Luis Munoz Marin Intl

Thu 5/7

6:30 am-7:16 pm

1 stop12h 46m

$186

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Fri 4/24

11:30 am-12:29 am

1 stop12h 59m

San Juan Luis Munoz Marin Intl

Thu 4/30

1:59 am-10:45 am

1 stop8h 46m

$210

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Fri 5/1

11:30 am-12:29 am

1 stop12h 59m

San Juan Luis Munoz Marin Intl

Thu 5/7

6:30 am-7:16 pm

1 stop12h 46m

$220

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Sat 4/18

11:40 am-12:29 am

1 stop12h 49m

San Juan Luis Munoz Marin Intl

Fri 4/24

1:59 am-10:45 am

1 stop8h 46m

$244

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Sun 4/12

6:00 am-3:04 pm

1 stop9h 04m

San Juan Luis Munoz Marin Intl

Sun 4/19

4:34 pm-10:17 am

1 stop17h 43m

$250
Quickest round-trip

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Sun 4/12

6:00 am-3:04 pm

1 stop9h 04m

San Juan Luis Munoz Marin Intl

Wed 4/15

1:59 am-10:45 am

1 stop8h 46m

$255

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Sun 5/31

8:01 pm-4:01 am

1 stop8h 00m

San Juan Luis Munoz Marin Intl

Sun 6/14

6:44 am-7:21 pm

1 stop12h 37m

$260

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Thu 6/11

8:16 pm-3:57 am

1 stop7h 41m

San Juan Luis Munoz Marin Intl

Sun 6/14

6:44 am-7:21 pm

1 stop12h 37m

$276

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Sun 4/26

11:35 am-12:29 am

1 stop12h 54m

San Juan Luis Munoz Marin Intl

Sun 5/3

7:17 pm-10:45 am

1 stop15h 28m

$280

Fort MyersSan Juan

RSW - SJU

RSWSJU

Fort Myers SW Florida Intl

Sun 5/10

8:01 pm-4:01 am

1 stop8h 00m

San Juan Luis Munoz Marin Intl

Thu 5/14

6:30 am-7:16 pm

1 stop12h 46m

$281

Flights are sorted by cheapest round-trip flights first.

Showing 1-10 of 20 resultsSorted by cheapest first
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See travel insights to San Juan from

How to get the cheapest flight ticket from Fort Myers to San Juan

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the typical price of a round-trip flight between Fort Myers and San Juan?

What is the cheapest month to fly to San Juan?

If you’re not able to fly to San Juan in June, then October is your next best option. Flight prices from Fort Myers to San Juan during October average around $353.

What is the cheapest time of day to depart on your flight to San Juan?

The cheapest time of day to fly to San Juan is in the evening when flights can be purchased for as low as $119. If you have a flexible travel schedule, then try to avoid flying at noon when prices are $170 on average. Flights to San Juan from Fort Myers at noon are generally more expensive because this time of day is more convenient for travelers’ schedules.

Cheap Fort Myers to San Juan flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Fort Myers to San Juan

Fastest flight time

5h 30m

Direct flights

None
The fastest flight from Fort Myers to San Juan takes 5h 30m
There are no direct flights from Fort Myers to San Juan. There are no popular flight routes from Fort Myers to San Juan.
Search flight deals

Frequently asked questions about flying from Fort Myers to San Juan

  • How far is Fort Myers SW Florida Intl to San Juan by plane?

    The distance between Fort Myers SW Florida Intl and San Juan is about 1151.3 mi. Typically, this will take 5h 30m by plane in normal conditions.

  • When did momondo last update prices for flights from Fort Myers SW Florida Intl Airport to San Juan?

    Prices for flights from Fort Myers SW Florida Intl Airport to San Juan are updated daily.

  • How many operators does momondo search for flights from Fort Myers SW Florida Intl Airport to San Juan?

  • How old do you have to be to fly from Fort Myers SW Florida Intl Airport to San Juan?

    The minimum age a child must be to fly alone is five but airlines that offer an unaccompanied minor (UNMR) service will have their own age restrictions, including rules around flight length, timings, and stopovers. We always recommend checking with the individual airline you are booking with to travel from Fort Myers SW Florida Intl Airport to San Juan.

  • What documentation or ID do you need to fly to San Juan?

    The travel and health documents required for your trip to San Juan can vary based on your itinerary and personal situation. As a rule, consider having multiple documents such as a national ID card or driver’s license, and a passport valid for six-months after you plan to arrive at San Juan. We always recommend checking with your airline or a trusted third party such as IATA to get advice.

Best airlines flying from Fort Myers to San Juan

Compare and see reviews for airlines that fly from Fort Myers to San Juan with momondo
Airline
Rating
Free Cancellation
Price
FrontierPriceFrom $168Free CancellationRating
5.7
2,997 reviews
Search Frontier flights
DeltaPriceFrom $245Free CancellationRating
7.9
8,394 reviews
Search Delta flights
JetBluePriceFrom $254Free CancellationRating
7.2
2,926 reviews
Search JetBlue flights
SouthwestPriceFrom $325Free CancellationRating
8.0
4,337 reviews
Search Southwest flights
American AirlinesPriceFrom $365Free CancellationRating
7.1
11,562 reviews
Search American Airlines flights

Why use momondo?

Why should I use momondo to find a flight deal from Fort Myers to San Juan?

It is quick and easy to find Fort Myers to San Juan flights on momondo. We search and return numerous flight options from various airlines and agents. You can then use our filters to narrow your search until you have found the most convenient flight to San Juan that suits you.

Can I find flights from Fort Myers to San Juan with flexible booking policies on momondo?

Flights from Fort Myers to San Juan with flexible booking policies can be found by using the search form above and then selecting our dedicated flexible booking filter, which will highlight only the flights where this policy is applied.

How can momondo help me find flights from Fort Myers to San Juan?

momondo helps you find the best flight between Fort Myers and San Juan by providing filters to narrow your choice of flights to those matching your criteria. You can select flights based on numerous factors such as price, departure and landing times, airport and airline.

I’m not ready to book a flight from Fort Myers to San Juan right now. Can momondo alert me if prices change?

If you are simply researching potential flights to San Juan, momondo offers a useful price alert feature which will track prices for flights to San Juan from Fort Myers and alert you when they change.

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Find better results for your trip to Puerto Rico

Fly into one of these airports located in San Juan

Airports listed have a maximum distance of 7.1 mi from San Juan
San Juan Isla Grande Airport
San Juan Luis Munoz Marin Intl Airport