Cheap flights from Manila to Tokyo from $108

The cheapest month to fly to Tokyo from Manila is in September. Flight prices, which tend to average around $170, are often lower during this time because this is during the off-season. If you’re not able to fly to Tokyo in September, then June is your next best option. Flight prices from Manila to Tokyo during June average around $180.

The cheapest day to depart on your flight to Tokyo is on a Friday when prices can be found for as low as $290. This is often the case because there is less demand to fly during this day of the week. Flights from Manila to Tokyo on a Tuesday will generally be more expensive and average around $384. Keep in mind that these prices on both days could fluctuate depending on the season and the demand.

In the evening is the cheapest time of day to fly from Manila to Tokyo when you can find flight prices for as low as $288. Flying to Tokyo in the evening is an ideal time because this is during off-peak travel hours. In contrast, the most expensive time of day to depart to Tokyo is in the morning when prices are around $336.

Fly from Manila Ninoy Aquino Intl to Tokyo Narita for the best Manila Ninoy Aquino Intl - Tokyo flight prices

You are more likely to see cheaper flights to Tokyo from Manila when booking weeks ahead of your departure date. In general, you can expect to find flights to Tokyo for around $216 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Tokyo from Manila for as low as $188 on momondo.

There are 4 cabin classes available to choose from on Manila Ninoy Aquino Intl to Tokyo flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Jetstar Japan, Philippines AirAsia, and Philippine Airlines are the most popular carriers operating from Manila Ninoy Aquino Intl to Tokyo

Philippine Airlines, Cebu Pacific and Philippines AirAsia are the top three most popular airlines that fly to Tokyo from Manila according to our data. Philippine Airlines is the first choice among our users, with 32% of people opting to fly with this airline when traveling to Tokyo. Keep in mind that there are 8 different airlines that fly to Tokyo on a routine basis, so you have a few additional options to choose from.

Historically, on average around 10% of flights between Manila and Tokyo have experienced a delay on any given week. The average delay length over the past 12 months has been 123 minutes.

Generally, flights departing in the morning tend to experience fewer delays. Flights at night have, in the past, seen delays more frequently in comparison.

Thursday is statistically the day of the week which experiences the fewest number of delays on this flight route. Friday has historically seen more delays on average compared to the rest of the week.

According to our data, ANA have had the least number of delays on this route over the last 12 months; with about 6% of their flights experiencing any sort of delay.

Hong Kong (HKG) was the most common stop: 61% of momondo users choosing 1-stop flights on this route connected there.

Flights via Hong Kong (HKG) offer the lowest average round-trip price of $257.

Flights connecting via Hong Kong (HKG) have the shortest average one-way travel time: 7h 57m.

Hong Kong (HKG) has the shortest average layover time for this route: 1h 44m.

As of February 2026, there are 23 flights per day flying from Manila to Tokyo. The most common time of day flights depart is 9:00AM, with 48% of flights taking off at noon.

As of February 2026, there are 161 flights per week flying from Manila to Tokyo. The most common day of the week flights depart is Fri, with 16% of flights taking off on this day.