Cheap flights from Manila to Zamboanga City from $43

If you aren’t able to travel during the month of February, then book flights to Zamboanga City from Manila during November instead. Flights to Zamboanga City in November, while not as cheap as those in February, still average around $78.

The cheapest day to depart on your flight to Zamboanga City is on a Friday when prices can be found for as low as $98. This is often the case because there is less demand to fly during this day of the week. Flights from Manila to Zamboanga City on a Sunday will generally be more expensive and average around $142. Keep in mind that these prices on both days could fluctuate depending on the season and the demand.

The cheapest time of day to fly to Zamboanga City is in the morning when flights can be purchased for as low as $114. Flights to Zamboanga City are more costly in the afternoon, with an average ticket price of $126. Departure times in the afternoon fall within the peak daily travel times, which is why tickets can be more expensive.

Fly from Manila Ninoy Aquino Intl to Zamboanga City for the best Manila Ninoy Aquino Intl - Zamboanga City flight prices

You are more likely to see cheaper flights to Zamboanga City from Manila when booking weeks ahead of your departure date. In general, you can expect to find flights to Zamboanga City for around $104 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Zamboanga City from Manila for as low as $72 on momondo.

There are 2 cabin classes available to choose from on Manila Ninoy Aquino Intl to Zamboanga City flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

Historically, on average around 18% of flights between Manila and Zamboanga City have experienced a delay on any given week. The average delay length over the past 12 months has been 103 minutes.

Generally, flights departing at night tend to experience fewer delays. Flights in the morning have, in the past, seen delays more frequently in comparison.

Thursday is statistically the day of the week which experiences the fewest number of delays on this flight route. Wednesday has historically seen more delays on average compared to the rest of the week.

According to our data, Philippine Airlines have had the least number of delays on this route over the last 12 months; with about 11% of their flights experiencing any sort of delay.

10 flights are operational daily from Manila to Zamboanga City as of March 2026. The most popular departure time for this route is 5:00AM, with 50% of flights per day taking off in the afternoon.

As of March 2026, 71 flights take off from Manila and land in Zamboanga City each week. The most common flight departure day for this route is Sat, with 17% of weekly flights taking off on this day.