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Cheap flights from Johor Bahru to Kota Kinabalu from $44

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from Johor Bahru to Kota Kinabalu departing on 12/4. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
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Find the cheapest flights from Johor Bahru to Kota Kinabalu

Cheap round-trip flights

AirAsia Logo
6:55 pm - 9:15 pmJHB-BKI
2h 20mnonstop
AirAsia Logo
12:55 pm - 3:10 pmBKI-JHB
2h 15mnonstop
$83AirAsia
Find Deal
Fri, Oct 31 - Sun, Nov 2
AirAsia Logo
5:15 pm - 7:35 pmJHB-BKI
2h 20mnonstop
AirAsia Logo
9:40 pm - 11:55 pmBKI-JHB
2h 15mnonstop
$86AirAsia
Find Deal
Sun, Dec 7 - Thu, Dec 11
AirAsia Logo
6:55 pm - 9:15 pmJHB-BKI
2h 20mnonstop
AirAsia Logo
3:30 pm - 5:45 pmBKI-JHB
2h 15mnonstop
$88AirAsia
Find Deal
Sun, Nov 2 - Sat, Nov 8
AirAsia Logo
6:55 pm - 9:15 pmJHB-BKI
2h 20mnonstop
AirAsia Logo
7:50 pm - 10:05 pmBKI-JHB
2h 15mnonstop
$89AirAsia
Find Deal
Sun, Nov 2 - Sat, Nov 8
Malaysia Airlines Logo
6:50 pm - 9:30 amJHB-BKI
14h 40m1 stop
Malaysia Airlines Logo
8:50 pm - 6:10 pmBKI-JHB
21h 20m1 stop
$93Malaysia Airlines
Find Deal
Sun, Nov 2 - Sat, Nov 8
Malaysia Airlines Logo
6:50 pm - 9:30 amJHB-BKI
14h 40m1 stop
Malaysia Airlines Logo
10:10 am - 6:10 pmBKI-JHB
8h 00m1 stop
$122Malaysia Airlines
Find Deal
Sun, Nov 2 - Sat, Nov 8
Malaysia Airlines Logo
7:45 pm - 12:40 amJHB-BKI
4h 55m1 stop
Malaysia Airlines Logo
6:50 am - 3:50 pmBKI-JHB
9h 00m1 stop
$196Malaysia Airlines
Find Deal
Tue, Sep 30 - Sun, Oct 5
Batik Air Logo
4:00 pm - 1:25 pmJHB-BKI
21h 25m2 stops
Batik Air Logo
11:35 am - 10:35 amBKI-JHB
23h 00m2 stops
$238Batik Air
Find Deal
Sun, Dec 7 - Thu, Dec 11
Batik Air Logo
7:00 am - 2:05 pmJHB-BKI
31h 05m2 stops
Batik Air Logo
3:00 pm - 3:00 pmBKI-JHB
24h 00m2 stops
$242Batik Air
Find Deal
Sat, Oct 11 - Tue, Oct 14
Batik Air Logo
4:00 pm - 2:05 pmJHB-BKI
22h 05m2 stops
Batik Air Logo
3:30 pm - 3:00 pmBKI-JHB
23h 30m2 stops
$244Batik Air
Find Deal
Mon, Sep 8 - Wed, Sep 10

AirAsia flights from Johor Bahru to Kota Kinabalu

Our best AirAsia deals on Johor Bahru to Kota Kinabalu flight tickets
AirAsia
Oct 31
JHB6:55 pmJohor Bahru Sultan Ismail Intl
2h 20m
BKI9:15 pmKota Kinabalu
Nov 2
BKI12:55 pmKota Kinabalu
2h 15m
JHB3:10 pmJohor Bahru Sultan Ismail Intl
$83
Find similar
AirAsia
Dec 7
JHB5:15 pmJohor Bahru Sultan Ismail Intl
2h 20m
BKI7:35 pmKota Kinabalu
Dec 11
BKI9:40 pmKota Kinabalu
2h 15m
JHB11:55 pmJohor Bahru Sultan Ismail Intl
$86
Find similar
AirAsia
Nov 2
JHB6:55 pmJohor Bahru Sultan Ismail Intl
2h 20m
BKI9:15 pmKota Kinabalu
Nov 8
BKI3:30 pmKota Kinabalu
2h 15m
JHB5:45 pmJohor Bahru Sultan Ismail Intl
$88
Find similar

Batik Air flights from Johor Bahru to Kota Kinabalu

Our best Batik Air deals on Johor Bahru to Kota Kinabalu flight tickets
Batik Air
Dec 7
JHB4:00 pmJohor Bahru Sultan Ismail Intl
21h 25m
2 stops
BKI1:25 pmKota Kinabalu
Dec 11
BKI11:35 amKota Kinabalu
23h 00m
2 stops
JHB10:35 amJohor Bahru Sultan Ismail Intl
$238
Find similar
Batik Air
Oct 11
JHB7:00 amJohor Bahru Sultan Ismail Intl
31h 05m
2 stops
BKI2:05 pmKota Kinabalu
Oct 14
BKI3:00 pmKota Kinabalu
24h 00m
2 stops
JHB3:00 pmJohor Bahru Sultan Ismail Intl
$242
Find similar
Batik Air
Sep 8
JHB4:00 pmJohor Bahru Sultan Ismail Intl
22h 05m
2 stops
BKI2:05 pmKota Kinabalu
Sep 10
BKI3:30 pmKota Kinabalu
23h 30m
2 stops
JHB3:00 pmJohor Bahru Sultan Ismail Intl
$244
Find similar

momondo Fare Finder

 
Customize your flight search to find flights from Johor Bahru to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, momondo users made 832,500 searches. Data last updated August 27, 2025.
Use the filters below to find and compare flights from Johor Bahru to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Fri 10/31

6:55 pm-9:15 pm

Nonstop2h 20m

Kota Kinabalu

Sun 11/2

12:55 pm-3:10 pm

Nonstop2h 15m

$83

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 12/7

5:15 pm-7:35 pm

Nonstop2h 20m

Kota Kinabalu

Thu 12/11

9:40 pm-11:55 pm

Nonstop2h 15m

$86

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 11/2

6:55 pm-9:15 pm

Nonstop2h 20m

Kota Kinabalu

Sat 11/8

3:30 pm-5:45 pm

Nonstop2h 15m

$88

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 11/2

6:55 pm-9:15 pm

Nonstop2h 20m

Kota Kinabalu

Sat 11/8

7:50 pm-10:05 pm

Nonstop2h 15m

$89

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 11/2

6:50 pm-9:30 am

1 stop14h 40m

Kota Kinabalu

Sat 11/8

8:50 pm-6:10 pm

1 stop21h 20m

$93

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 11/2

6:50 pm-9:30 am

1 stop14h 40m

Kota Kinabalu

Sat 11/8

10:10 am-6:10 pm

1 stop8h 00m

$122

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Tue 9/30

7:45 pm-12:40 am

1 stop4h 55m

Kota Kinabalu

Sun 10/5

6:50 am-3:50 pm

1 stop9h 00m

$196

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 12/7

4:00 pm-1:25 pm

2 stops21h 25m

Kota Kinabalu

Thu 12/11

11:35 am-10:35 am

2 stops23h 00m

$238

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sat 10/11

7:00 am-2:05 pm

2 stops31h 05m

Kota Kinabalu

Tue 10/14

3:00 pm-3:00 pm

2 stops24h 00m

$242

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Mon 9/8

4:00 pm-2:05 pm

2 stops22h 05m

Kota Kinabalu

Wed 9/10

3:30 pm-3:00 pm

2 stops23h 30m

$244

Flights are sorted by cheapest round-trip flights first.

Showing 1-10 of 20 resultsSorted by cheapest first
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See travel insights to Kota Kinabalu from

How to get the cheapest flight ticket from Johor Bahru to Kota Kinabalu

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the cheapest month to fly to Kota Kinabalu?

In general, July is the cheapest month to fly from Johor Bahru to Kota Kinabalu. Due to it being the ‘off-season’ during this time, you can expect flight prices to be around $86. The month of August is another great option to travel to Kota Kinabalu, with average flight prices from Johor Bahru averaging around $102.

What is the cheapest day to depart on your flight to Kota Kinabalu?

According to our data, Friday is the cheapest day to fly to Kota Kinabalu from Johor Bahru. The lowest ticket price found for a Friday departure recently was $88. Keep in mind that prices can always vary depending on your route and whether or not you are flying domestic or international. Flights from Johor Bahru to Kota Kinabalu on a Thursday will generally be more expensive and average around $131. Keep in mind that these prices on both days could fluctuate depending on the season and the demand.

What is the cheapest time of day to depart on your flight to Kota Kinabalu?

According to our data, the cheapest time of day to fly to Kota Kinabalu is in the afternoon. momondo users have found flights departing from Johor Bahru to Kota Kinabalu in the afternoon for as low as $90. Keep in mind that these prices may fluctuate based on what airline you choose and the time of year you plan to travel. Flights to Kota Kinabalu are more costly in the evening, with an average ticket price of $138. Departure times in the evening fall within the peak daily travel times, which is why tickets can be more expensive.

What is the cheapest Johor Bahru Sultan Ismail Intl to Kota Kinabalu flight route?

Fly from Johor Bahru Sultan Ismail Intl to Kota Kinabalu for the best Johor Bahru Sultan Ismail Intl - Kota Kinabalu flight prices

How far in advance should I book a flight to Kota Kinabalu?

You are more likely to see cheaper flights to Kota Kinabalu from Johor Bahru when booking weeks ahead of your departure date. In general, you can expect to find flights to Kota Kinabalu for around $112 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Kota Kinabalu from Johor Bahru for as low as $89 on momondo.

What cabin class options are available on Johor Bahru Sultan Ismail Intl to Kota Kinabalu flights?

There is only 1 cabin class available to choose from on Johor Bahru Sultan Ismail Intl to Kota Kinabalu flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

How have Johor Bahru to Kota Kinabalu flight prices changed over time?

As of August 2025, prices for Johor Bahru to Kota Kinabalu flights are approximately 6% more expensive when compared to flights at the same time last year.

When to book flights from Johor Bahru to Kota Kinabalu

Are you open to changing your travel dates? Check out the ideal times to fly from Johor Bahru to Kota Kinabalu according to our flight data. Find out which month and days have the cheapest flights.
Estimated round-trip price

Cheap Johor Bahru to Kota Kinabalu (JHB to BKI) flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Johor Bahru to Kota Kinabalu

Best Price Found

$46

Fastest flight time

2h 20m

Direct flights

Every day

Airports in Kota Kinabalu

1 airport
The best one-way flight to Kota Kinabalu from Johor Bahru in the past 72 hours is $46. The best round-trip flight deal from Johor Bahru to Kota Kinabalu found on momondo in the last 72 hours is $76.
The fastest flight from Johor Bahru to Kota Kinabalu takes 2h 20m
Direct flights go from Johor Bahru to Kota Kinabalu every day.
There is 1 airport near Kota Kinabalu: Kota Kinabalu (BKI)
Search flight deals

  • How far is Johor Bahru Sultan Ismail Intl to Kota Kinabalu by plane?

    The straight-line distance from Johor Bahru Sultan Ismail Intl to Kota Kinabalu is 903.6 mi. Flights usually cover this in 2h 20m, depending on flying conditions and air traffic around both airports.

  • When did momondo last update prices for flights from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport?

    Prices for flights from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport are refreshed on a daily basis.

  • How many operators does momondo search for flights from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport?

  • How old do you have to be to fly from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport?

    Although the minimum age for a child to fly alone is five, airlines that offer an unaccompanied minor (UMNR) service may have their own age limits, which could be impacted by factors such as flight length, timing, and layovers. It is recommended that you verify with the airline you are booking with for travel from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport.

  • What documentation or ID do you need to fly to Kota Kinabalu Airport?

    The necessary travel and health documents for your Kota Kinabalu Airport trip may vary depending on your travel plans and individual circumstances. Generally, you should have various documents, such as a national ID card or driver's license and a passport that is valid for six months beyond your scheduled arrival date. We recommend seeking advice from your airline or a trusted third party, such as IATA.

  • What is the most popular plane model from Johor Bahru to Kota Kinabalu?

  • What is the most popular airline from Johor Bahru to Kota Kinabalu?

Best airlines flying from Johor Bahru to Kota Kinabalu

Compare and see reviews for airlines that fly from Johor Bahru to Kota Kinabalu with momondo
Airline
Rating
Free Cancellation
Price
AirAsiaPriceFrom $75Free CancellationRating
6.7
212 reviews
Search AirAsia flights

  • AirAsia Flights From Johor Bahru to Kota Kinabalu

    The lowest priced AirAsia flight from Johor Bahru to Kota Kinabalu from the last 72 hours was $75. Generally, AirAsia has 10 flights on this route every week with an average price of $108. AirAsia is rated 6.7/10 by our users.

Why use momondo?

Why should I use momondo to find a flight deal from Johor Bahru to Kota Kinabalu?

momondo compares prices from hundreds of airlines and agents so you can find and book the best deal on flights from Johor Bahru to Kota Kinabalu. Millions of users trust and use momondo every year so you are in good hands.

Can I find flights from Johor Bahru to Kota Kinabalu with flexible booking policies on momondo?

All flight searches from Johor Bahru to Kota Kinabalu on momondo can be filtered to show those which offer flexible booking policies.

How can momondo help me find flights from Johor Bahru to Kota Kinabalu?

momondo offers useful filters to help you find the right flight. Choose specific flight times, airports or even what payment method you prefer. We have numerous options to help you book your ideal flight from Johor Bahru to Kota Kinabalu.

I’m not ready to book a flight from Johor Bahru to Kota Kinabalu right now. Can momondo alert me if prices change?

Price alerts on flights to Kota Kinabalu from Johor Bahru are quick and easy to set up on momondo. Simply perform a search and select the price alert feature. It is as simple as that.

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