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Cheap flights from Johor Bahru to Kota Kinabalu from $44

This is the cheapest one-way flight price found by a momondo user in the last 72 hours by searching for a flight from Johor Bahru to Kota Kinabalu departing on 11/4. Fares may change, and may not be available for all flights or travel dates. Click the price to refresh the search for this deal.
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Find the cheapest flights from Johor Bahru to Kota Kinabalu

Cheap round-trip flights

Enter your travel dates to find the best prices.
AirAsia Logo
9:00 pm - 11:20 pmJHB-BKI
2h 20mnonstop
AirAsia Logo
7:00 am - 9:15 amBKI-JHB
2h 15mnonstop
$86AirAsia
Find Deal
Sun, Dec 7 - Thu, Dec 11
AirAsia Logo
3:10 pm - 5:30 pmJHB-BKI
2h 20mnonstop
AirAsia Logo
6:20 pm - 8:35 pmBKI-JHB
2h 15mnonstop
$89AirAsia
Find Deal
Sun, Nov 2 - Sat, Nov 8
AirAsia Logo
9:00 pm - 11:20 pmJHB-BKI
2h 20mnonstop
AirAsia Logo
7:00 am - 9:15 amBKI-JHB
2h 15mnonstop
$91AirAsia
Find Deal
Tue, Oct 28 - Fri, Oct 31
AirAsia Logo
7:40 pm - 10:00 pmJHB-BKI
2h 20mnonstop
AirAsia Logo
7:00 am - 9:15 amBKI-JHB
2h 15mnonstop
$93AirAsia
Find Deal
Sat, Oct 25 - Sun, Nov 2
Malaysia Airlines Logo
6:35 pm - 9:40 pmJHB-BKI
27h 05m1 stop
Malaysia Airlines Logo
10:10 am - 5:55 pmBKI-JHB
7h 45m1 stop
$129Malaysia Airlines
Find Deal
Fri, Jan 30 - Mon, Feb 2
Batik Air Logo
7:00 am - 9:30 pmJHB-BKI
14h 30m1 stop
Batik Air Logo
11:45 am - 3:00 pmBKI-JHB
27h 15m1 stop
$138Batik Air
Find Deal
Thu, Nov 13 - Mon, Nov 17
Malaysia Airlines Logo
6:35 pm - 9:40 pmJHB-BKI
27h 05m1 stop
Malaysia Airlines Logo
8:50 pm - 5:55 pmBKI-JHB
21h 05m1 stop
$159Malaysia Airlines
Find Deal
Fri, Mar 20 - Fri, Mar 27
Malaysia Airlines Logo
6:35 pm - 8:10 pmJHB-BKI
25h 35m1 stop
Malaysia Airlines Logo
10:10 am - 5:55 pmBKI-JHB
7h 45m1 stop
$161Malaysia Airlines
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Sun, Mar 15 - Thu, Mar 19
Batik Air Logo
6:00 pm - 11:45 amJHB-BKI
17h 45m2 stops
Batik Air Logo
3:00 pm - 3:00 pmBKI-JHB
24h 00m2 stops
$200Batik Air
Find Deal
Mon, Oct 27 - Fri, Oct 31
Batik Air Logo
6:00 pm - 2:05 pmJHB-BKI
20h 05m2 stops
Batik Air Logo
3:00 pm - 10:35 amBKI-JHB
19h 35m2 stops
$203Batik Air
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Sun, Oct 26 - Thu, Oct 30

AirAsia flights from Johor Bahru to Kota Kinabalu

Our best AirAsia deals on Johor Bahru to Kota Kinabalu flight tickets
AirAsia
Dec 7
JHB9:00 pmJohor Bahru Sultan Ismail Intl
2h 20m
BKI11:20 pmKota Kinabalu
Dec 11
BKI7:00 amKota Kinabalu
2h 15m
JHB9:15 amJohor Bahru Sultan Ismail Intl
$86
Find similar
AirAsia
Nov 2
JHB3:10 pmJohor Bahru Sultan Ismail Intl
2h 20m
BKI5:30 pmKota Kinabalu
Nov 8
BKI6:20 pmKota Kinabalu
2h 15m
JHB8:35 pmJohor Bahru Sultan Ismail Intl
$89
Find similar
AirAsia
Oct 28
JHB9:00 pmJohor Bahru Sultan Ismail Intl
2h 20m
BKI11:20 pmKota Kinabalu
Oct 31
BKI7:00 amKota Kinabalu
2h 15m
JHB9:15 amJohor Bahru Sultan Ismail Intl
$91
Find similar

Malaysia Airlines flights from Johor Bahru to Kota Kinabalu

Our best Malaysia Airlines deals on Johor Bahru to Kota Kinabalu flight tickets
Malaysia Airlines
Jan 30
JHB6:35 pmJohor Bahru Sultan Ismail Intl
27h 05m
1 stop
BKI9:40 pmKota Kinabalu
Feb 2
BKI10:10 amKota Kinabalu
7h 45m
1 stop
JHB5:55 pmJohor Bahru Sultan Ismail Intl
$129
Find similar
Malaysia Airlines
Mar 20
JHB6:35 pmJohor Bahru Sultan Ismail Intl
27h 05m
1 stop
BKI9:40 pmKota Kinabalu
Mar 27
BKI8:50 pmKota Kinabalu
21h 05m
1 stop
JHB5:55 pmJohor Bahru Sultan Ismail Intl
$159
Find similar
Malaysia Airlines
Mar 15
JHB6:35 pmJohor Bahru Sultan Ismail Intl
25h 35m
1 stop
BKI8:10 pmKota Kinabalu
Mar 19
BKI10:10 amKota Kinabalu
7h 45m
1 stop
JHB5:55 pmJohor Bahru Sultan Ismail Intl
$161
Find similar

momondo Fare Finder

 
Customize your flight search to find flights from Johor Bahru to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, momondo users made 832,500 searches. Data last updated October 14, 2025.
Use the filters below to find and compare flights from Johor Bahru to Kota Kinabalu that are best for you.

Fly from

Fly to

Route

Depart

Return

Price

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 12/7

9:00 pm-11:20 pm

Nonstop2h 20m

Kota Kinabalu

Thu 12/11

7:00 am-9:15 am

Nonstop2h 15m

$86

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 11/2

3:10 pm-5:30 pm

Nonstop2h 20m

Kota Kinabalu

Sat 11/8

6:20 pm-8:35 pm

Nonstop2h 15m

$89

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Tue 10/28

9:00 pm-11:20 pm

Nonstop2h 20m

Kota Kinabalu

Fri 10/31

7:00 am-9:15 am

Nonstop2h 15m

$91

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sat 10/25

7:40 pm-10:00 pm

Nonstop2h 20m

Kota Kinabalu

Sun 11/2

7:00 am-9:15 am

Nonstop2h 15m

$93

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Fri 1/30

6:35 pm-9:40 pm

1 stop27h 05m

Kota Kinabalu

Mon 2/2

10:10 am-5:55 pm

1 stop7h 45m

$129

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Thu 11/13

7:00 am-9:30 pm

1 stop14h 30m

Kota Kinabalu

Mon 11/17

11:45 am-3:00 pm

1 stop27h 15m

$138

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Fri 3/20

6:35 pm-9:40 pm

1 stop27h 05m

Kota Kinabalu

Fri 3/27

8:50 pm-5:55 pm

1 stop21h 05m

$159

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 3/15

6:35 pm-8:10 pm

1 stop25h 35m

Kota Kinabalu

Thu 3/19

10:10 am-5:55 pm

1 stop7h 45m

$161

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Mon 10/27

6:00 pm-11:45 am

2 stops17h 45m

Kota Kinabalu

Fri 10/31

3:00 pm-3:00 pm

2 stops24h 00m

$200

Johor BahruKota Kinabalu

JHB - BKI

JHBBKI

Johor Bahru Sultan Ismail Intl

Sun 10/26

6:00 pm-2:05 pm

2 stops20h 05m

Kota Kinabalu

Thu 10/30

3:00 pm-10:35 am

2 stops19h 35m

$203

Flights are sorted by cheapest round-trip flights first.

Showing 1-10 of 20 resultsSorted by cheapest first
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See travel insights to Kota Kinabalu from

How to get the cheapest flight ticket from Johor Bahru to Kota Kinabalu

Look no further. We've gone through all the searches for this route on momondo so you have the important information and insights to find the cheapest flight ticket for your trip

What is the cheapest month to fly to Kota Kinabalu?

In general, July is the cheapest month to fly from Johor Bahru to Kota Kinabalu. Due to it being the ‘off-season’ during this time, you can expect flight prices to be around $86. The month of August is another great option to travel to Kota Kinabalu, with average flight prices from Johor Bahru averaging around $93.

What is the cheapest day to depart on your flight to Kota Kinabalu?

According to our data, Friday is the cheapest day to fly to Kota Kinabalu from Johor Bahru. The lowest ticket price found for a Friday departure recently was $93. Keep in mind that prices can always vary depending on your route and whether or not you are flying domestic or international. Flights from Johor Bahru to Kota Kinabalu on a Wednesday will generally be more expensive and average around $123. Keep in mind that these prices on both days could fluctuate depending on the season and the demand.

What is the cheapest time of day to depart on your flight to Kota Kinabalu?

According to our data, the cheapest time of day to fly to Kota Kinabalu is in the afternoon. momondo users have found flights departing from Johor Bahru to Kota Kinabalu in the afternoon for as low as $88. Keep in mind that these prices may fluctuate based on what airline you choose and the time of year you plan to travel. Flights to Kota Kinabalu are more costly in the morning, with an average ticket price of $119. Departure times in the morning fall within the peak daily travel times, which is why tickets can be more expensive.

What is the cheapest Johor Bahru Sultan Ismail Intl to Kota Kinabalu flight route?

Fly from Johor Bahru Sultan Ismail Intl to Kota Kinabalu for the best Johor Bahru Sultan Ismail Intl - Kota Kinabalu flight prices

How far in advance should I book a flight to Kota Kinabalu?

You are more likely to see cheaper flights to Kota Kinabalu from Johor Bahru when booking weeks ahead of your departure date. In general, you can expect to find flights to Kota Kinabalu for around $109 when searching weeks out. However, flight prices might be lower outside of this timeframe. For example, people recently found flights to Kota Kinabalu from Johor Bahru for as low as $95 on momondo.

What cabin class options are available on Johor Bahru Sultan Ismail Intl to Kota Kinabalu flights?

There is only 1 cabin class available to choose from on Johor Bahru Sultan Ismail Intl to Kota Kinabalu flights. Cabin price and availability will vary by airline so perform a search above to find the right deals for you.

How have Johor Bahru to Kota Kinabalu flight prices changed over time?

As of October 2025, prices for Johor Bahru to Kota Kinabalu flights are approximately 6% more expensive when compared to flights at the same time last year.

When to book flights from Johor Bahru to Kota Kinabalu

Are you open to changing your travel dates? Check out the ideal times to fly from Johor Bahru to Kota Kinabalu according to our flight data. Find out which month and days have the cheapest flights.
Estimated round-trip price

Cheap Johor Bahru to Kota Kinabalu (JHB to BKI) flight deals and tips

Find info about flight duration, direct flights, and airports for your flight from Johor Bahru to Kota Kinabalu

Best Price Found

$90

Fastest flight time

2h 20m

Direct flights

Every day

Airports in Kota Kinabalu

1 airport
The best flight deal from Johor Bahru to Kota Kinabalu found on momondo in the last 72 hours is $90
The fastest flight from Johor Bahru to Kota Kinabalu takes 2h 20m
Direct flights go from Johor Bahru to Kota Kinabalu every day.
There is 1 airport near Kota Kinabalu: Kota Kinabalu (BKI)
Search flight deals

  • How far is Johor Bahru Sultan Ismail Intl to Kota Kinabalu by plane?

    The straight-line distance from Johor Bahru Sultan Ismail Intl to Kota Kinabalu is 903.6 mi. Flights usually cover this in 2h 20m, depending on flying conditions and air traffic around both airports.

  • When did momondo last update prices for flights from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport?

    Prices for flights from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport are refreshed on a daily basis.

  • How many operators does momondo search for flights from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport?

  • How old do you have to be to fly from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport?

    Although the minimum age for a child to fly alone is five, airlines that offer an unaccompanied minor (UMNR) service may have their own age limits, which could be impacted by factors such as flight length, timing, and layovers. It is recommended that you verify with the airline you are booking with for travel from Johor Bahru Sultan Ismail Intl Airport to Kota Kinabalu Airport.

  • What documentation or ID do you need to fly to Kota Kinabalu Airport?

    The necessary travel and health documents for your Kota Kinabalu Airport trip may vary depending on your travel plans and individual circumstances. Generally, you should have various documents, such as a national ID card or driver's license and a passport that is valid for six months beyond your scheduled arrival date. We recommend seeking advice from your airline or a trusted third party, such as IATA.

  • What is the most popular plane model from Johor Bahru to Kota Kinabalu?

  • What is the most popular airline from Johor Bahru to Kota Kinabalu?

Best airlines flying from Johor Bahru to Kota Kinabalu

Compare and see reviews for airlines that fly from Johor Bahru to Kota Kinabalu with momondo
Airline
Rating
Free Cancellation
Price
AirAsiaPriceFrom $75Free CancellationRating
6.8
219 reviews
Search AirAsia flights

  • AirAsia Flights From Johor Bahru to Kota Kinabalu

    The lowest priced AirAsia flight from Johor Bahru to Kota Kinabalu from the last 72 hours was $75. Generally, AirAsia has 13 flights on this route every week with an average price of $103. AirAsia is rated 6.8/10 by our users.

Why use momondo?

Why should I use momondo to find a flight deal from Johor Bahru to Kota Kinabalu?

momondo compares prices from hundreds of airlines and agents so you can find and book the best deal on flights from Johor Bahru to Kota Kinabalu. Millions of users trust and use momondo every year so you are in good hands.

Can I find flights from Johor Bahru to Kota Kinabalu with flexible booking policies on momondo?

All flight searches from Johor Bahru to Kota Kinabalu on momondo can be filtered to show those which offer flexible booking policies.

How can momondo help me find flights from Johor Bahru to Kota Kinabalu?

momondo offers useful filters to help you find the right flight. Choose specific flight times, airports or even what payment method you prefer. We have numerous options to help you book your ideal flight from Johor Bahru to Kota Kinabalu.

I’m not ready to book a flight from Johor Bahru to Kota Kinabalu right now. Can momondo alert me if prices change?

Price alerts on flights to Kota Kinabalu from Johor Bahru are quick and easy to set up on momondo. Simply perform a search and select the price alert feature. It is as simple as that.

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